PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_15406
Common NameKK1_015850
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARF
Protein Properties Length: 990aa    MW: 109986 Da    PI: 6.7913
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_15406genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.3e-2245146199
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++++
  C.cajan_15406  45 FCKQLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQ 137
                    99*****************************9545444.38************************************************..56888 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    +l+++++r+
  C.cajan_15406 138 QLLLGIRRA 146
                    89****997 PP
2Auxin_resp120.11.7e-39171254183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    aahaa+++s+F+v+YnPr+s+seFv++++k+ k+++ ++ s+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+WrsL+
  C.cajan_15406 171 AAHAAANNSPFTVFYNPRSSPSEFVIPLAKYYKSVYsHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRSLQ 254
                    79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-4235174IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-4137160IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-1844136No hitNo description
PfamPF023624.4E-2045146IPR003340B3 DNA binding domain
PROSITE profilePS5086311.77345147IPR003340B3 DNA binding domain
SMARTSM010195.9E-2245147IPR003340B3 DNA binding domain
PfamPF065072.6E-34171254IPR010525Auxin response factor
PfamPF023095.9E-7877963IPR033389AUX/IAA domain
PROSITE profilePS5174528.084878962IPR000270PB1 domain
SuperFamilySSF542771.28E-6895956No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 990 aa     Download sequence    Send to blast
MRVADPETDQ VYAQMTLQPV PSVDKDALLR SDLALKSTKP QPDFFCKQLT ASDTSTHGGF  60
SVPRRAAEKI FPPLDYSMQP PAQELVARDL HDTVWTFRHI YRGQPKRHLL TTGWSLFVSG  120
KRLFAGDSVL FIRDEKQQLL LGIRRANRQP ANISSSVLSS DSMHIGVLAA AAHAAANNSP  180
FTVFYNPRSS PSEFVIPLAK YYKSVYSHQP SLGMRFRMMF ETEDSGTRRY MGTITGISDL  240
DPVRWKNSQW RSLQVGWDES TAGEKRSRVS IWEIEPVTAP FFICPPPFFR SKRPRQPGMP  300
DDELSDFDNI FKRTIPWIGD DMCMKDSQGL PGLSLAQWMN MQHNPAMASS LQPNYRLLQT  360
AQQLDHLQKL PSTSSALGTV MPPQQQLGDI TQQPRQKSAN QTIPQSQVQA QLLHPQNIVQ  420
SNNILQQPQP SIQNHQLHRS LSQNPSQQQQ QTIIGQNQQQ NLIQSPVPDH VQQLQMSDNQ  480
IQLQLLQKLQ QQKQTLLAQQ TALQQPAQFS QIQDQQRQIL DKTHNLSRAL APGQVLEIPT  540
ILQNSLPEAN SISNQMTKAN CQNNIQYSQQ PKLQQQQPGL LSEMSGHVAL LPTPTTNQLS  600
TAGSSILTGA AGAGQSVITD DVPSCSTSPS TNNCATALQP LINSRFQRST IVGDDMAQST  660
ATLLSSSALE TISSNANLLK DLQPKSEVKP SLNISKIQNQ GHFGPQTYLN VSAAHTDCLD  720
TSSSTTSVCL SQSDAHMHQN NNPLSYNPQT MLFRDNSQDG EVQADPRSNI PYANNIDSQM  780
GMPLNPDSLL TKSTLGLGKD LSNNFSSEDM LGNYENNRDT RQELSSSMVS QTFGVPDMTF  840
NSIDSTIDHS NFLNRGAWAP PPAPPPPPLP PAQFQRMRTY TKVYKRGAVG RSIDIARYSG  900
YEELKQDLAR RFGIEGQLED RQRIGWKLVY VDHENDVLLV GDDPWEEFVN CVRCIKILSP  960
QEVQQMSLDG DFANGGLPNQ ACSSSDGGNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1284275117388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_15406
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020220626.10.0auxin response factor 19 isoform X1
TrEMBLA0A151T2S30.0A0A151T2S3_CAJCA; Auxin response factor
STRINGXP_007152995.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-178auxin response factor 19