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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_14976 | ||||||||
Common Name | KK1_015413 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 504aa MW: 55803.3 Da PI: 5.1914 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.8e-17 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l C.cajan_14976 34 KGPWTSAEDAILVNYVNKHGEGNWNAVQKYSGLSRCGKSCRLRWANHL 81 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 87 | 130 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E+ l++++++++G++ W++ a++++ gRt++++k++w++ C.cajan_14976 87 KGAFTAQEERLIAELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 130 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.301 | 29 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-30 | 33 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-15 | 33 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 34 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 35 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.15E-11 | 36 | 81 | No hit | No description |
PROSITE profile | PS51294 | 24.231 | 82 | 136 | IPR017930 | Myb domain |
SMART | SM00717 | 9.3E-16 | 86 | 134 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-15 | 87 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 89 | 135 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.83E-11 | 89 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MSQMTNEVDD NVHRNDQTRS QLNDEGNGDV VLKKGPWTSA EDAILVNYVN KHGEGNWNAV 60 QKYSGLSRCG KSCRLRWANH LRPNLKKGAF TAQEERLIAE LHAKMGNKWA RMAAHLPGRT 120 DNEIKNYWNT RIKRRQRAGL PLYPPEVFLQ AFKESKHGQG TSGISDGDNR HQDFLDKNNY 180 EIHDAVFDSL KENQGILPYV PELPNISANS ILPNGLGSPP YCNFVPSTLP NHLRESTMSF 240 LGSSGLSRNE FYPFDHIKDN TSDKIADSFG LHSPLDRGAS SHGSICYSHS LSNGNSSTSK 300 LTTEAVKSEL PSLQYPETEF GSWGTSPPPP LNESADVFIH SQPPNALDSG CSSPHNSGLL 360 DALVYQAKTL SSKNNCSDKS SNSSVATPGD IAESSALNMY ATEWEDYADP VSPFCATSIL 420 NECPAVSTNG NSWDEWESFQ TITGNNNVKM QSVDQVWAPK SENQYMSNLT WPDVLLTSEW 480 HDLYSENGVN QTIMTDASDD FSRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-29 | 32 | 135 | 5 | 107 | B-MYB |
1mse_C | 5e-29 | 31 | 135 | 1 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-29 | 31 | 135 | 1 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_14976 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC187165 | 0.0 | AC187165.17 Glycine max cultivar Williams 82 clone gmw2-91b16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020223870.1 | 0.0 | transcription factor MYB65 isoform X2 | ||||
TrEMBL | A0A151SYT5 | 0.0 | A0A151SYT5_CAJCA; Transcription factor GAMYB | ||||
STRING | GLYMA04G15150.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 1e-104 | myb domain protein 65 |