PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

HD-ZIP

Protein Properties

Length: 247aa MW: 28496.3 Da PI: 4.7165

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_14151	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.6e-19	42	93	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f+++q++ Le++Fe ++ + +++ +LA++lgL+ rqV +WFqN+Ra++k C.cajan_14151 42 RRFSDDQIKSLENMFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 93 48*************************************************9 PP
2	HD-ZIP_I/II	118.2	4.5e-38	41	131	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rr+s++q+k+LE++Fe+e++Lep++K +lareLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e+L+ke+++L +l++ C.cajan_14151 41 TRRFSDDQIKSLENMFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYTILQTNYNTLASRFEALRKEKQTLLIQLQK 131 79***********************************************************************************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.2	35	95	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.46E-17	37	105	IPR009057	Homeodomain-like
SMART	SM00389	6.9E-16	38	99	IPR001356	Homeobox domain
Pfam	PF00046	3.0E-16	42	93	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.6E-19	42	102	IPR009057	Homeodomain-like
CDD	cd00086	1.05E-14	42	96	No hit	No description
PRINTS	PR00031	1.0E-5	66	75	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	70	93	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	75	91	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.5E-15	95	137	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MEYTYSAEAE TYTSSSTTPS TALRKKKNNN NNNNNNNNNN TRRFSDDQIK SLENMFETES 60 RLEPRKKLQL ARELGLQPRQ VAIWFQNKRA RWKSKQLERD YTILQTNYNT LASRFEALRK 120 EKQTLLIQLQ KLNHLMQKPL EPGEKCTQVE AANSVDSESE YGGTMKCEAE EKPSPSMERS 180 EHVFGVLSDD DTSIKVENFG LEDEPGLLNF AEHADGSLTS PEDWGAFESN DLLGQSTSDY 240 QWWDFWS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00320	DAP	Transfer from AT2G46680	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_14151

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031176	0.0	KT031176.1 Glycine max clone HN_WYQ_5 homeodomain/HOMEOBOX transcription factor (Glyma16g02390.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020223175.1	0.0	homeobox-leucine zipper protein ATHB-12 isoform X2
Swissprot	P46897	5e-66	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A151SWH1	0.0	A0A151SWH1_CAJCA; Homeobox-leucine zipper protein ATHB-7
STRING	GLYMA16G02390.1	1e-143	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5635	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	2e-64	homeobox 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]