PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_14029 | ||||||||
Common Name | KK1_014452 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 307aa MW: 34732.5 Da PI: 8.2013 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.3 | 5e-52 | 11 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhP+deelv++yL kkv++++ l + +vd++k+ePwd+p+++ + kewyf+++rd+kyatg r+nrat+sgyWkatgkd+++l+ k C.cajan_14029 11 LPPGFRFHPRDEELVCDYLMKKVTHNDSLL---MIDVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILR-K 102 79***********************99544...789************7777799**************************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g+lvg++ktLvfy+grapkg+kt+Wvmhe+r+ C.cajan_14029 103 GTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRI 134 99****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-61 | 2 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.362 | 11 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-27 | 12 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 307 aa Download sequence Send to blast |
MSNISMVEAK LPPGFRFHPR DEELVCDYLM KKVTHNDSLL MIDVDLNKCE PWDIPETACV 60 GGKEWYFYTQ RDRKYATGLR TNRATASGYW KATGKDRPIL RKGTLVGMRK TLVFYQGRAP 120 KGRKTEWVMH EFRIEGPHGP PKISSSKEDW VLCRVFYKNR EVAAKPSMGS CYEDTGSSSL 180 PALMDSYISF DQTQTQTHAD EFEQVPCFSI FSQNHQTSPI FNHMATTMEP KLPAANHVSA 240 YGGAPNLGYC LDPFSCDRKV LKAVLSQITK MDRNPLNQSL KGSPSLGEGS SESYLSEVGM 300 PHMWNNY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-49 | 7 | 161 | 11 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_14029 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU440355 | 0.0 | EU440355.1 Glycine max transcriptional factor NAC35 (NAC35) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020223961.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-127 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A151SW56 | 0.0 | A0A151SW56_CAJCA; NAC domain-containing protein 21/22 | ||||
STRING | GLYMA15G40510.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10010 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-122 | NAC domain containing protein 1 |