PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_13790 | ||||||||
Common Name | KK1_014213 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 284aa MW: 32320.5 Da PI: 8.9833 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.1 | 2.1e-33 | 49 | 189 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 lp+G++F+Ptd+e++ e+L++kv+++ ++l+ +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + + C.cajan_13790 49 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICYTHPEKLP-GVSKDGLLRHFFHRPSKAYTTGTRKRRKVHsdedgsETR 142 799***********9.99*****99984443333333222333336**********.555555677******************855455555778 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v++ +++l+g kk+Lv+y g+++k+ekt+Wvmh+y+l C.cajan_13790 143 WHKTGKTRPVYN-SSKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 189 ************.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-37 | 44 | 208 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.632 | 49 | 208 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-15 | 50 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MTQCSDLVNN RHNIIVEGRK DSLIRTCPTC GHHIKCQEQG GGIHDLPGLP AGVKFDPTDQ 60 EILEHLEAKV RSDIHKLHPL IDEFIPTLEG ENGICYTHPE KLPGVSKDGL LRHFFHRPSK 120 AYTTGTRKRR KVHSDEDGSE TRWHKTGKTR PVYNSSKLKG YKKILVLYTN YGKQRKPEKT 180 NWVMHQYHLG CDEEEKEGEL VVSKVFYQTQ PRQCGSLIKD SSLPGKHMKG QSVHQVVSNN 240 KNNNGFVEYY HSNFISFDQG GQHRPTTAQV ISHFPVHEGA PFIP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_13790 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235102 | 0.0 | AC235102.1 Glycine max strain Williams 82 clone GM_WBa0006K18, complete sequence. | |||
GenBank | AC235165 | 0.0 | AC235165.1 Glycine max strain Williams 82 clone GM_WBa0104E24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029128638.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-116 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A151SVG9 | 0.0 | A0A151SVG9_CAJCA; NAC domain-containing protein 8 | ||||
STRING | XP_007132767.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-118 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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