PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_13757 | ||||||||
Common Name | KK1_014179 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 221aa MW: 25662.8 Da PI: 5.7327 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++++G +W++ ++ g+ R++k+c++rw++yl C.cajan_13757 14 KGAWTPEEDRKLIAYITKYGHWNWRLLPKFAGLARCGKSCRLRWLNYL 61 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 59.3 | 8.2e-19 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ eE+e +v+++++lG++ W++Ia++++ gRt++++k++w++ C.cajan_13757 67 RGNFSREEEETIVKLHEKLGNR-WSAIAAELP-GRTDNEIKNHWHT 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.9E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.732 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.77E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.96E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.741 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-17 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.74E-11 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MVRTPCCDQN GLKKGAWTPE EDRKLIAYIT KYGHWNWRLL PKFAGLARCG KSCRLRWLNY 60 LRPDVKRGNF SREEEETIVK LHEKLGNRWS AIAAELPGRT DNEIKNHWHT ALKKRIEKKS 120 SEAKRETAKE KLPKSMETVL ENHSDSYTTD AAAAAAATNR ENWVPEIDDD YFFSVDAYTE 180 SAVCADFWTE PYLVDNSYVP PEYDVELWSQ NELYECEGLF S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 12 | 117 | 5 | 109 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_13757 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020224454.1 | 1e-165 | transcription factor MYB4 | ||||
Swissprot | Q9SJX8 | 2e-63 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | A0A151SVG1 | 1e-164 | A0A151SVG1_CAJCA; Myb-related protein Myb4 | ||||
STRING | GLYMA13G37903.1 | 1e-114 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 2e-64 | myb domain protein 14 |
Publications ? help Back to Top | |||
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