PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13525
Common NameKK1_013940
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB_related
Protein Properties Length: 661aa    MW: 74079.5 Da    PI: 9.1144
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13525genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07562611147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
    C.cajan_13525 562 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 611
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.28E-7363454IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.565557616IPR017930Myb domain
SMARTSM007172.0E-7561614IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-10562612IPR009057Homeodomain-like
CDDcd116604.40E-17563613No hitNo description
SuperFamilySSF466891.2E-15563644IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MVPQKRLDYS FNGYQVPTKR RATRSARRNA TFQRRLEDNQ MCAFDLLATV ADNLLQEKHN  60
PSTSSDRSSQ KNRDGFVKEE CLDANKPLKA ELSDEASCDR RYQNEFVKEN KPFKAELSDE  120
GSSDRKCFSN ISSQVYNQKG CSSGCPESSG FKLDGDVSKI KDELHKLGKV PIDTGTELCC  180
FEALDEKPPA LINSCGNVKL SGYDDSMPQS SLSKGCDNVL VYSRDDDENF SGCAHPSTKI  240
KSFRPITFID DRKINKRLAS KYHEVAQESK HDTLSNSVLD GNMKPVYSSR KNYYKSQRSQ  300
MNIPFKKRKI FNCSSDTNSN GYIRRGDTYY SPKNDTNQSF SCSSSGMSKD HGTSSLDHSA  360
LRSGDSHVKL RIKSFRVPEL FIEIPETATI GSLRRTVMEA VTAVLGSGLR VGVILHGKKV  420
RDDNKTLLQT GISHDNHLDA LGFTLEPNSS QNKSPACATD SLCVPSADMP QPLIGYTSSP  480
AVIHQRIQCF SNMLAEHQIA GLGNLVESDH DSAPSPINTS GEKKFKDSKE LINVPEMGME  540
ALAVIPVHQK SKRTEIAQRR IRRPFSVAEV EALVQAVEKL GTGRWRDVKL RAFDNAKHRT  600
YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLTAHA YWSQQQTKQH LRHHSKPCLL  660
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-605466511106Telomere binding protein TBP1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13525
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941300.0BT094130.1 Soybean clone JCVI-FLGm-18O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020223964.10.0telomere repeat-binding protein 2 isoform X1
RefseqXP_020223965.10.0telomere repeat-binding protein 2 isoform X1
TrEMBLA0A151SUT50.0A0A151SUT5_CAJCA; Telomere-binding protein 1
STRINGXP_007150334.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-123TRF-like 2