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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_13374 | ||||||||
Common Name | KK1_013786 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | LBD | ||||||||
Protein Properties | Length: 195aa MW: 22879.4 Da PI: 4.4766 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 37.4 | 7.3e-12 | 1 | 43 | 58 | 100 |
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ms+++y++++rardPv G++++i++lq+q+e ++ael+l+ ++ C.cajan_13374 1 MSTIMYQSDMRARDPVGGCYKLIQHLQSQIEYANAELHLVLQH 43 89***********************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.032 | 1 | 44 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-8 | 1 | 40 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSTIMYQSDM RARDPVGGCY KLIQHLQSQI EYANAELHLV LQHLAFFRAQ AHQNNDISNV 60 TSSQPFLQQM SQEQHQQYQQ QQQQFEQQQQ QQQFEQQQYV NYNPSLQEDI NLWAVQNSIS 120 LLPLSLEDDI NQDPVVDYDY DQKPVLELMN KIESDATVHP HHRFVCIKVH VLCFLNECDL 180 DCVFCFHTTA GSEFN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_13374 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029128889.1 | 1e-112 | LOB domain-containing protein 22-like isoform X2 | ||||
TrEMBL | A0A151SU69 | 1e-140 | A0A151SU69_CAJCA; LOB domain-containing protein 22 | ||||
STRING | GLYMA13G42570.1 | 7e-33 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-16 | LOB domain-containing protein 22 |