PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13347
Common NameKK1_013756
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 355aa    MW: 39082.6 Da    PI: 7.4657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13347genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.4e-08263303954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+RR+ri +++  L++++P        K++ a++L +A +Y+k L
  C.cajan_13347 263 ARQRRERISERIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 303
                    69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.021254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-14259319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-12262316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-5263303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-4276308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016787Molecular Functionhydrolase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MPVKSRAAGA TWEEALTSRP SLSVNVNQTS NYVADFNMVH QQQHLINGTQ NGKATCSLES  60
LDCLLSATNN SNTDTSVEDD DGISMILSDC RNLWNFSYGS AVSSGESESN ASNARSKNSD  120
MGYQVNELDE TVSQSFSDKY LTPGGVIDSE VICTKRSNSC FSIAQNSSTT EGGFRLISET  180
LPKSKKPKWD HKRPGSSNIN FQQPNSSMTP SSLEEPDPEA IAQMKEMIYR AAAFRPVNLG  240
MEVVEKPKRK NVKISTDPQT VAARQRRERI SERIRVLQKI VPGGSKMDTA SMLDEAANYL  300
KFLRSQVKAL ENLGNKLDTM NCPPTNIAFS FNPSFPVQTH FPIQNPSSHI QHSKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13347
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029128603.10.0transcription factor bHLH87
SwissprotQ8S3D24e-91BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A151SU650.0A0A151SU65_CAJCA; Transcription factor bHLH87
STRINGGLYMA15G02531.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]