PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_12584 | ||||||||
Common Name | KK1_012970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | G2-like | ||||||||
Protein Properties | Length: 372aa MW: 41710.8 Da PI: 5.8166 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.6 | 6e-33 | 227 | 282 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++qLGG+++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ C.cajan_12584 227 KQRRCWSPDLHRRFVDALQQLGGAQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 282 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.254 | 224 | 284 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-30 | 225 | 285 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.83E-18 | 225 | 285 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-27 | 227 | 282 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-7 | 229 | 280 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010092 | Biological Process | specification of organ identity | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0048449 | Biological Process | floral organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MDLSLDLTLG FVPQPISLFF PTKLDNHQTL ATLDAFVQRL EDELTKVQAF KRELPLSMLL 60 LNDAIARLRE EKVKCSGMQD QDPPINQEEF PPLENENEST EKKNWMSSAQ LWSTHKTKSV 120 ILISNCTILD FHLFYRIETR TVFLFFGLQW QRIDEEDDGN PVNGDSCVPK TEGSQVPRFN 180 LVTPASEPSH SNSKSVCGDN SGGSSLLRVE LQSQPQPPQH MQQNPRKQRR CWSPDLHRRF 240 VDALQQLGGA QVATPKQIRE LMQVDGLTND EVKSHLQKYR LHVRRFPVSS VGQGNNGSWM 300 GQDECGEKSK GNLSVSQTGS PQGPLTPLLL GGSVKGLSSP GRNSVDAEDE QSDCQNWKGG 360 FHHQLEPDNQ SL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00475 | DAP | Transfer from AT4G37180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_12584 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 2e-75 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020217660.1 | 0.0 | transcription factor HHO5 | ||||
TrEMBL | A0A151THY4 | 0.0 | A0A151THY4_CAJCA; Two-component response regulator ARR1 | ||||
STRING | XP_007156835.1 | 1e-161 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-47 | G2-like family protein |