PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_12156
Common NameKK1_012528
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family AP2
Protein Properties Length: 530aa    MW: 58366.1 Da    PI: 8.0134
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_12156genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.8e-16347397255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  C.cajan_12156 347 AYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 397
                    69***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.03E-11191313No hitNo description
SMARTSM003803.2E-14192317IPR001471AP2/ERF domain
PROSITE profilePS5103213.235192311IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-9192214IPR001471AP2/ERF domain
PRINTSPR003671.8E-5193204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-9275311IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-7284312IPR016177DNA-binding domain
PRINTSPR003671.8E-5293313IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17346407IPR016177DNA-binding domain
CDDcd000181.39E-11346407No hitNo description
SMARTSM003809.6E-32347411IPR001471AP2/ERF domain
PfamPF008474.5E-10347397IPR001471AP2/ERF domain
PROSITE profilePS5103219.151347405IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-18347406IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAGATNWLTF SLTPIDSHFV PFDTSSQCFV DNFYGNATSQ NHSLNFFLIP GNLFPSVVHH  60
NPRCTSSKGV MESQSGNQAL VVPKVEDFFE SQTETQENSS LTHVYDHGSA SAYFSDLQDL  120
NAIPGLQAFP ELDDSAYDRT RVAPTELSYK GGLSLCVAAH GSDSEVKAIV AVENDTHKKV  180
LPNNLGGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQVEKCG YVCKNYSKYK  240
TIYSPSLSLN SFHRSVCILS LALTFAFAFH SPGKLGLTIT SCGYDKEEKA ARAYDLAAIK  300
YWGPTATTNF PIANYTKELE EMKHAGKQEF IASLRRKSSG FSRGASAYRG VTRHHQQGRW  360
QARIGRVAGN KDLYLGTFAT EEEAAEAYDI AAIKFRGSSA VTNFEMSRYD VEAILNSSLP  420
VGGVAKRLKL SPESETKAPI NSSTQQPEVT NVSSSINFSN IQPLASIPFD PAHTCYPHNL  480
FHQFHPTNGA SSTAESSATV TNANATTLTT LPPPPPLPGF FIWPHHQSYN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_12156
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216129.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-108AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A151TGR20.0A0A151TGR2_CAJCA; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_007156467.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.31e-121AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]