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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_12000 | ||||||||
Common Name | KK1_012369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 116aa MW: 13453.7 Da PI: 10.426 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.9 | 1.1e-08 | 14 | 57 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a +++ ++ +W +a+ +g +++ ++k ++ C.cajan_12000 14 SWTPKQNKLFEKALAKYDKDtpdRWQNVAKAVG-DKSADEVKRHY 57 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-5 | 5 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.592 | 10 | 65 | IPR017884 | SANT domain |
SMART | SM00717 | 1.0E-7 | 11 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.97E-13 | 13 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.64E-7 | 14 | 61 | No hit | No description |
Pfam | PF00249 | 2.6E-7 | 14 | 57 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MASSSLKQKA CDSSWTPKQN KLFEKALAKY DKDTPDRWQN VAKAVGDKSA DEVKRHYEIL 60 LEDLRHIESG RVPLPKYKSI GSSSCVDEEE RKKKKKRLLT KTLKPLTFFL KLRIFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-30 | 1 | 88 | 1 | 84 | RADIALIS |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 95 | ERKKKKK |
2 | 89 | 97 | ERKKKKKRL |
3 | 90 | 96 | RKKKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_12000 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020217930.1 | 7e-62 | protein RADIALIS-like 4 | ||||
Swissprot | Q1A173 | 6e-34 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A151TGA1 | 2e-78 | A0A151TGA1_CAJCA; Uncharacterized protein | ||||
STRING | GLYMA11G12460.1 | 2e-54 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 4e-36 | RAD-like 6 |