PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Nin-like

Protein Properties

Length: 932aa MW: 103720 Da PI: 6.5056

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_11912	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	3.8e-29	621	671	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ C.cajan_11912 621 EKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 671 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.086	603	691	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-26	623	671	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.5E-21	827	916	No hit	No description
Gene3D	G3DSA:3.10.20.240	6.6E-22	829	911	No hit	No description
PROSITE profile	PS51745	20.135	832	914	IPR000270	PB1 domain
SMART	SM00666	6.9E-20	832	914	IPR000270	PB1 domain
Pfam	PF00564	6.7E-16	835	913	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 932 aa Download sequence Send to blast
MEDHFPPKGK EIGYCTSPGV QLEESTSVDG GTKNSVSDDM FSYFSELMNF DTYAGWSNSP 60 SLTDQSLANV FSSFSSPPDG LNLVEHSNGP FFMTEVGEIH NDMESSPSCE ERVIFHQMDI 120 QLGFLDDANN LDSKQNHNGT SQKINTSDMC NYIISRSSGR SLNDRMLRAL SSFMESADAG 180 MLAQVWLPIK HGDEFILSTS EQPYLLDPKL AGYREVSRAF TFSAEGKPGS CPGLPARVFI 240 SHVPEWTSNV GYYNKTEYLR LEHAMNHEIR GSIALPISDE NSQVPCAVLE LVTTKEKPNF 300 DRELEIVTHA LQFLKKYVIY IQQSDQHRTN DKCPCDDFMQ LVNLRTTTPP RLLPQCLSSN 360 KRSALTEIID VLRAVCHAHR LPLALTWIPC CYREGTGDET ERIRIKEGRT SSNEKCVLCI 420 EESACYVNDG AVRGFVHACV EHHLVEGQGI AGKALQSNHP FFYTDVKTYD IVEYPLVHHA 480 RKYNLNAAVA IRLRSTYTND DDYILEFFLP VNMTGSSEQQ LLLDNLSGTM RRICRTLRTV 540 SDAELTGIEG SQGGFPREKV SGIFPLSRRN SQITFINDDH DSVQKMSLKV SNLKNNGIEA 600 AHSQEMNGSR KQIEKKRCTV EKNVSLSVLQ QYFSGSLKDA AKSIGVCPTT LKRICRQHGI 660 SRWPSRKINK VNRSLKKIQT VLDSVQGVEG GLKFDPYTGG FIAGGSIMQE TESHKYLLFP 720 EKSSVKDPKP ATQKKISVVS APGSTSENSA IKLDGNDVGL VGNHLVHSRS VLISSTNRVE 780 GADEHNHPTS SRTTDSSNGS GSIMHGSSSC SQSFENHKHS KVKSTCVDSG SKIIVKAGYR 840 GDTIRFKFDP SAGCFKLYEE VATRFKLQNG SFQLKYLDDE EEWVMLVNDS DLQECTEIMD 900 DIGTRCVKFL VRDVPCVLSS RDSNSCFLSD SS

Sequence ? help Back to Top

Protein Sequence Length: 932 aa Download sequence Send to blast

MEDHFPPKGK EIGYCTSPGV QLEESTSVDG GTKNSVSDDM FSYFSELMNF DTYAGWSNSP  60
SLTDQSLANV FSSFSSPPDG LNLVEHSNGP FFMTEVGEIH NDMESSPSCE ERVIFHQMDI  120
QLGFLDDANN LDSKQNHNGT SQKINTSDMC NYIISRSSGR SLNDRMLRAL SSFMESADAG  180
MLAQVWLPIK HGDEFILSTS EQPYLLDPKL AGYREVSRAF TFSAEGKPGS CPGLPARVFI  240
SHVPEWTSNV GYYNKTEYLR LEHAMNHEIR GSIALPISDE NSQVPCAVLE LVTTKEKPNF  300
DRELEIVTHA LQFLKKYVIY IQQSDQHRTN DKCPCDDFMQ LVNLRTTTPP RLLPQCLSSN  360
KRSALTEIID VLRAVCHAHR LPLALTWIPC CYREGTGDET ERIRIKEGRT SSNEKCVLCI  420
EESACYVNDG AVRGFVHACV EHHLVEGQGI AGKALQSNHP FFYTDVKTYD IVEYPLVHHA  480
RKYNLNAAVA IRLRSTYTND DDYILEFFLP VNMTGSSEQQ LLLDNLSGTM RRICRTLRTV  540
SDAELTGIEG SQGGFPREKV SGIFPLSRRN SQITFINDDH DSVQKMSLKV SNLKNNGIEA  600
AHSQEMNGSR KQIEKKRCTV EKNVSLSVLQ QYFSGSLKDA AKSIGVCPTT LKRICRQHGI  660
SRWPSRKINK VNRSLKKIQT VLDSVQGVEG GLKFDPYTGG FIAGGSIMQE TESHKYLLFP  720
EKSSVKDPKP ATQKKISVVS APGSTSENSA IKLDGNDVGL VGNHLVHSRS VLISSTNRVE  780
GADEHNHPTS SRTTDSSNGS GSIMHGSSSC SQSFENHKHS KVKSTCVDSG SKIIVKAGYR  840
GDTIRFKFDP SAGCFKLYEE VATRFKLQNG SFQLKYLDDE EEWVMLVNDS DLQECTEIMD  900
DIGTRCVKFL VRDVPCVLSS RDSNSCFLSD SS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_11912

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235172	0.0	AC235172.1 Glycine max strain Williams 82 clone GM_WBb0002N17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020216193.1	0.0	protein NLP9
Refseq	XP_020216195.1	0.0	protein NLP9
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A151TG33	0.0	A0A151TG33_CAJCA; Uncharacterized protein
STRING	GLYMA11G13390.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]