PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_11208
Common NameKK1_011535
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family Trihelix
Protein Properties Length: 872aa    MW: 97300 Da    PI: 8.6842
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_11208genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.21e-18780860186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W+++ev++Li +r e++++++  k +++lWee+s+++ + g++rsp qCk+ w +l ++y+++ ++ k++     +++py++++e
  C.cajan_11208 780 KWKHDEVRKLIGMRGELNDKFQVVKGRMALWEEISQNLLANGISRSPGQCKSLWTSLLQKYEQEVKNVKSK-----KKWPYLEDME 860
                    7*************************************************************999998874.....68*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.106.8E-6878328IPR001279Metallo-beta-lactamase
SuperFamilySSF562811.07E-7079493IPR001279Metallo-beta-lactamase
SMARTSM008493.9E-2591288IPR001279Metallo-beta-lactamase
PfamPF127061.0E-10103238IPR001279Metallo-beta-lactamase
PfamPF075217.9E-6436465IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.2773837IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.4E-4774839IPR009057Homeodomain-like
PfamPF138372.4E-16778862No hitNo description
CDDcd122031.45E-19779841No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    Send to blast
MATCTSLSLS PHTFCCRHRP YPTRRSLTCS LSSSPLPDTD GPKVLRKRSR RTEGPKKSME  60
DSVQRKMEEF YEGRDGPPLR VLPIGGLGEI GMNCMLVGNY DRYILIDAGV MFPDYDELGV  120
QKIIPDTTFI RKWRHKIEAV VITHGHEDHI GALPWVIPAL DSHTPIFASS FTMELIRKRL  180
KDHGIFVPSR LKVFRTRKKF VAGPFEIEPI TVTHSIPDCC GLVLRCSDGT ILHTGDWKID  240
ETPLDGRVFD REALEELSKE GVTLMMSDST NVLSPGRTIS ESVVADALLR KISAAKGRVI  300
TTQFASNIHR LGSVKAAADL TGRKLVFVGM SLRTYLDAAW KDGKAPIDPS TLVKAEDIDA  360
YAPKDLLIVT TGSQAEPRAA LNLASYGSSH SFKLTKEDVV LYSAKVIPGN ESRVMEMLNR  420
ISEIGSAIIM GKNECLHTSG HGYRGELEEV LRIVKPQHFL PIHGELLFLK EHELLGKSTG  480
IRHTTVIKNG EMLGVSHLRN RRVLSNGFMS FGKENLQLMY SDGEKAFGTS SELFIDERMR  540
IALDGIIVVS MEIFRPQSLD NPDENTLKGK IRITTRCLWL DKGKLLDALH KAAHAALSSC  600
PVSCPLAHME RIVSEVLRKM VRKYSGKRPE VIAIAIENPA AVLANEINTR LSGKFHVDGI  660
SPLRKVVDGK ENLRTKKQIR VLLIDAYLID VDGLPPTEDI TISSGYEDDL SETGDSDAIL  720
KPFVESSPVE KSIKANNGYV RRKEKLSPLR DDGSEDTEEC NSVDTSNSEP KSSKSAKRNK  780
WKHDEVRKLI GMRGELNDKF QVVKGRMALW EEISQNLLAN GISRSPGQCK SLWTSLLQKY  840
EQEVKNVKSK KKWPYLEDME RILSDNEALA TK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A2e-877963719560RIBONUCLEASE J
5a0t_B2e-877963719560RIBONUCLEASE J
5a0v_A2e-877963719560RIBONUCLEASE J
5a0v_B2e-877963719560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_11208
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217324.10.0ribonuclease J isoform X1
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A151TE300.0A0A151TE30_CAJCA; Ribonuclease J
STRINGXP_007155530.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50993450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]