PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_11039
Common NameKK1_011363
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GATA
Protein Properties Length: 273aa    MW: 30205.4 Da    PI: 6.1367
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_11039genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.67e-18165199135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  C.cajan_11039 165 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 199
                    99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-17159209IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.4159195IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.5E-15161196IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.75E-15161220No hitNo description
CDDcd002022.74E-15164211No hitNo description
PROSITE patternPS003440165190IPR000679Zinc finger, GATA-type
PfamPF003209.1E-16165199IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEAHEFFHNS FSDNPSAADH FIVEDFFDFS NDEDAATTLT DSLPAHAVTP ADTTTNCNFP  60
AAQDHFSGDL SVPYDDLAEL EWLSKFAEES FSSEDLQKLQ LISGVRVESD GASSERREAS  120
PVLGPAQGSV PGKARSKRSR GDWASRLVAP RRREGAEGGA EGRKCLHCAT DKTPQWRTGP  180
MGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVLTKHSNSH FTRILLHLLF TQQQQQLLHL  240
QHQQNVMFDV SSSSNADDYL IHHPLGPHFT NLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_11039
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216543.10.0LOW QUALITY PROTEIN: GATA transcription factor 12
SwissprotP697817e-72GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A151TDM10.0A0A151TDM1_CAJCA; GATA transcription factor
STRINGGLYMA06G09080.11e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-67GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]