PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_11038

Common Name

KK1_011362

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

HD-ZIP

Protein Properties

Length: 830aa MW: 90775.9 Da PI: 6.459

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_11038	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.4e-19	19	77	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ C.cajan_11038 19 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77 5679*****************************************************97 PP
2	START	174.7	5.9e-55	159	367	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v ++a v+e+l+d++ W +++++++++++ s+g g+++l + C.cajan_11038 159 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPA-RVAEILKDRLSWFRDCRAVDVVNAMSTGngGTIELLY 253 7899****************************************************.9999999999*********************** PP EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS START 96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187 ++l+a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p +++vRa +lpSg+li+p+++g+s +++v+h+ l+ ++++++lr+l++s C.cajan_11038 254 MQLYAPTTLAPgRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAmppVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYES 349 *************************************99988899******************************************* PP HHHHHHHHHHHHTXXXXX CS START 188 glaegaktwvatlqrqce 205 ++ +++t++a+l+++++ C.cajan_11038 350 SMLLAQRTTMAALRHLRQ 367 ***********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.758	14	78	IPR001356	Homeobox domain
SMART	SM00389	1.3E-15	16	82	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.98E-17	18	82	IPR009057	Homeodomain-like
CDD	cd00086	1.23E-16	19	79	No hit	No description
Pfam	PF00046	1.6E-16	20	77	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-18	21	77	IPR009057	Homeodomain-like
CDD	cd14686	1.13E-6	71	110	No hit	No description
PROSITE profile	PS50848	23.746	149	377	IPR002913	START domain
CDD	cd08875	2.92E-76	153	368	No hit	No description
SMART	SM00234	1.1E-40	158	368	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	1.2E-19	158	364	IPR023393	START-like domain
SuperFamily	SSF55961	9.75E-35	158	369	No hit	No description
Pfam	PF01852	2.4E-52	159	367	IPR002913	START domain
Pfam	PF08670	1.3E-51	689	829	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence Send to blast
MAVSSACKDG SKVAMDNGKY VRYTPEQVEA LERLYHECPK PSSLRRQQLI RECPILSNIE 60 PKQIKVWFQN RRCREKQRKE ASRLQAVNRK LTAMNKLLME ENDRLQKQVS QLVYENSFFR 120 QQTQNATLAT TDTSCESVVT SGQRNLTPRD ASPAGLLSIA EETLAEFLSK ATGTAVEWVQ 180 MPGMKPGPDS IGIVAISHGC PGVAARACGL VGLEPARVAE ILKDRLSWFR DCRAVDVVNA 240 MSTGNGGTIE LLYMQLYAPT TLAPGRDFWL LRYTSLLEDG SLVVCERSLN NTQNGPAMPP 300 VQHFVRADML PSGYLIRPCE GGGSIIHIVD HMVLEPWSVP EVLRPLYESS MLLAQRTTMA 360 ALRHLRQISQ EVSQPSVTGW GRRPAALRAL SQRLSKGFNE AVNGFADDGW SMLESDGIDD 420 VTLLVNSSPS KMMGVNLGYN NNGFPSVSSS VLCAKASMLL QNVPPAILLR FLREHRSEWA 480 DSSIDAYSAA AIKAGPCSLP GARPGGFGGQ VILPLAHTIE HEEASYLRLI SLDDMTIPGD 540 VFLLQLCSGV DEHAVGTSAE LVFAPIDASF SDDAPILPSG FRIIPLDSST GAASPNRTLD 600 LASALEVGTT ANKAAGDNSG HSGSTKSVMT IAFQFAFDVH LQENIATMAR QYVRSIIASV 660 QRVSLALSPS RFGSHNAFHL PPGTPEAQTL ARWICNSYRF YLGVELLKCE GSESILKSLW 720 HHSDAVLCCS LKALPVFTFA NQAGLDMLET TLVALQDITL EKIFDDNGKK TLCSEFPQIM 780 QQGFMCIQGG ICLSSMGRPV SYERAVAWKV LNEEESAHCI CFMFINWSFV

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence Send to blast

MAVSSACKDG SKVAMDNGKY VRYTPEQVEA LERLYHECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE ASRLQAVNRK LTAMNKLLME ENDRLQKQVS QLVYENSFFR  120
QQTQNATLAT TDTSCESVVT SGQRNLTPRD ASPAGLLSIA EETLAEFLSK ATGTAVEWVQ  180
MPGMKPGPDS IGIVAISHGC PGVAARACGL VGLEPARVAE ILKDRLSWFR DCRAVDVVNA  240
MSTGNGGTIE LLYMQLYAPT TLAPGRDFWL LRYTSLLEDG SLVVCERSLN NTQNGPAMPP  300
VQHFVRADML PSGYLIRPCE GGGSIIHIVD HMVLEPWSVP EVLRPLYESS MLLAQRTTMA  360
ALRHLRQISQ EVSQPSVTGW GRRPAALRAL SQRLSKGFNE AVNGFADDGW SMLESDGIDD  420
VTLLVNSSPS KMMGVNLGYN NNGFPSVSSS VLCAKASMLL QNVPPAILLR FLREHRSEWA  480
DSSIDAYSAA AIKAGPCSLP GARPGGFGGQ VILPLAHTIE HEEASYLRLI SLDDMTIPGD  540
VFLLQLCSGV DEHAVGTSAE LVFAPIDASF SDDAPILPSG FRIIPLDSST GAASPNRTLD  600
LASALEVGTT ANKAAGDNSG HSGSTKSVMT IAFQFAFDVH LQENIATMAR QYVRSIIASV  660
QRVSLALSPS RFGSHNAFHL PPGTPEAQTL ARWICNSYRF YLGVELLKCE GSESILKSLW  720
HHSDAVLCCS LKALPVFTFA NQAGLDMLET TLVALQDITL EKIFDDNGKK TLCSEFPQIM  780
QQGFMCIQGG ICLSSMGRPV SYERAVAWKV LNEEESAHCI CFMFINWSFV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_11038

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020217689.1	0.0	homeobox-leucine zipper protein ATHB-8
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A151TDN0	0.0	A0A151TDN0_CAJCA; Homeobox-leucine zipper protein ATHB-15
STRING	GLYMA04G09000.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1946	33	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]