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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_10996 | ||||||||
Common Name | KK1_011320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 365aa MW: 40873.3 Da PI: 4.9813 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.7e-19 | 99 | 148 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g C.cajan_10996 99 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 148 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 99 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.092 | 99 | 156 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-38 | 99 | 162 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-22 | 99 | 157 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.61E-33 | 99 | 157 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 100 | 111 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.1E-12 | 100 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MCGGAIISDF IPAAVTDTSR RLTANYLWPD LKKRTSRKSD LDDDFEADFR EFKDDSDFDI 60 DDDDKPFAFA ASSRRSPAAK SVAFKGRAEK CAKRKRKNQY RGIRQRPWGK WAAEIRDPRK 120 GVRVWLGTFN TAEEAARAYD AEARRIRGKK AKVNFPEEAP GSSVKRSKVN PQEYRKTVQP 180 NLSHKFNAGK NYEDYCCPMD LVEQKPVVSQ YANMGSFHGS GNELTSLASS DDVTLYFSSD 240 QLCNSFDYAD LGSSEQGPKT PEIPSILSAP LGCESHLVHD ANLQNNMQTN SQDVVSMQDN 300 SAKTLSEELV DIESQLKFFQ MPYLEGNWDD TSLDSFLSCD TTQDGGNLMN LWSFDDIPSM 360 AGGVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 99 | 156 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 7e-21 | 98 | 158 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_10996 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020213035.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 | ||||
Swissprot | Q9SSA8 | 3e-65 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A151TY88 | 0.0 | A0A151TY88_CAJCA; Ethylene-responsive transcription factor RAP2-12 | ||||
STRING | XP_007139068.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4808 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 9e-62 | related to AP2 12 |