PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_10449
Common NameKK1_010750
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 470aa    MW: 50291.5 Da    PI: 8.9742
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_10449genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.3e-115075227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                   + ++C +++rtG C yG+rC+++H++
  C.cajan_10449 50 GVANCVYYMRTGMCGYGSRCRYNHPR 75
                   7899********************96 PP
2zf-CCCH382.8e-1296120327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    +++C+++ +tGtCk+G++CkF+H++
  C.cajan_10449  96 EPPCQYYIKTGTCKFGASCKFHHPK 120
                    79*********************96 PP
3zf-CCCH35.91.3e-11141166227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++C+++++ G+Ck+G +CkF+H++
  C.cajan_10449 141 GEKECSYYLKAGQCKFGVSCKFHHPQ 166
                    7899********************97 PP
4zf-CCCH361.2e-11297323127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C++++rtG Ck+G  C+++H++
  C.cajan_10449 297 PGEPECQYYLRTGDCKFGLACRYHHPQ 323
                    5799*********************97 PP
5zf-CCCH331e-10342366226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    +   C f++++G+Ck+G++CkF H+
  C.cajan_10449 342 GVQACAFYLQNGHCKFGSTCKFDHP 366
                    5678********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.4324876IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-64875IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-75075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-65177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-55475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.52593121IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-593120IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-996120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-696121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-598119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197139167IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5139166IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-9141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5141167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.633296324IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5296323IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9298323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-5301324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624340368IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-6340367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6342371IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8342366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-5345366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDLYGRSPAR NGSNPPNQPE WRSPATDTGL EESMWHLALG GGESYPERPG VANCVYYMRT  60
GMCGYGSRCR YNHPRDRAAV VAAVRATGDY PERVGEPPCQ YYIKTGTCKF GASCKFHHPK  120
NGGGYLSQAP LNVYGYPLRP GEKECSYYLK AGQCKFGVSC KFHHPQPAGT SMPESAPQFY  180
QQVQSPTVPL PEQYGGASTS LRVARPPILP GSYVQGAYGP VLLSPGVVPF PGWSHYSAPV  240
SPVPSPGAQP AVGATSLYGV TQLSSPTSAF ARPYTPLPST TGPSASSLKE KLFPERPGEP  300
ECQYYLRTGD CKFGLACRYH HPQDHTVARP LLSPVGLPLR PGVQACAFYL QNGHCKFGST  360
CKFDHPLGSM RYTPSTSSLI DMPVTPYPVG SLLSQLGPST SSDLRPELMS GSKKESFSGR  420
IPSSGNGSGT SVGLIFSQGG SVSRSDVQHS SQNSAPSSSS RSTRQSGEIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_10449
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937450.0BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020212733.10.0zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A151TWQ70.0A0A151TWQ7_CAJCA; Zinc finger CCCH domain-containing protein 32
STRINGGLYMA02G17260.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein