PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_10204

Common Name

KK1_010494

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NF-YC

Protein Properties

Length: 227aa MW: 25120.2 Da PI: 6.8635

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_10204	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	45.6	1.5e-14	79	116	1	35
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkaded 35 ql++fw++q iek+tdfknh+lPlarikki+kaded C.cajan_10204 79 QLQQFWSNQyqeIEKVTDFKNHSLPLARIKKIMKADED 116 89****99999**********************9 PP
2	NF-YC	42.4	1.5e-13	115	149	67	101
NF-YC 67 eenkrrtlkksdiaaavtrtdifdflvdivprdel 101 e+nkrrtl+k+diaaa+trtdifdflvdivpr++l C.cajan_10204 115 EDNKRRTLQKNDIAAAITRTDIFDFLVDIVPREDL 149 589*****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.39E-13	73	140	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.3E-8	93	116	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	9.3E-10	117	146	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MDHQGHSQNP SMGVVGSGAQ LAYGSNPYQP GQITGAPGSV VTSVGTIQST SQPAGAQLGQ 60 HQLAYQHIHQ QQQHQLQQQL QQFWSNQYQE IEKVTDFKNH SLPLARIKKI MKADEDNKRR 120 TLQKNDIAAA ITRTDIFDFL VDIVPREDLK DEVLASIPRG TMPVAGPADT LPYCYMPPQH 180 APQVGTGGVI MGKPVMDPNM YAQQSHPYIA PQMWPQPPDQ RQSSPEH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	124	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269\|PubMed:25105952}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_10204

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092678	1e-151	BT092678.1 Soybean clone JCVI-FLGm-16A14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029126893.1	1e-146	nuclear transcription factor Y subunit C-3 isoform X1
Swissprot	Q8L4B2	1e-51	NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBL	A0A151TW30	1e-166	A0A151TW30_CAJCA; Nuclear transcription factor Y subunit C-9
STRING	GLYMA19G42460.1	1e-138	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1257	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.4	4e-50	nuclear factor Y, subunit C9

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714] Bi C,Ma Y,Wang XF,Zhang DP Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis. Plant Mol. Biol., 2017. 95(4-5): p. 425-439 [PMID:28924726] Liu X, et al. Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering. Plant Physiol., 2018. 177(1): p. 105-114 [PMID:29599268]