PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_09493
Common NameKK1_009761
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 621aa    MW: 68286.7 Da    PI: 6.2779
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_09493genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-07217237526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C++f++ G C++Gd C +aHg
  C.cajan_09493 217 PCPDFRK-GACRRGDMCEYAHG 237
                    8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.7E-937135IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.33E-942132IPR020683Ankyrin repeat-containing domain
CDDcd002042.25E-745131No hitNo description
PROSITE profilePS502978.74787131IPR020683Ankyrin repeat-containing domain
PfamPF000230.02589116IPR002110Ankyrin repeat
SMARTSM003564.0E-6212238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4216239IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582217239IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5217237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4245275IPR000571Zinc finger, CCCH-type
SMARTSM0035629247270IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MCCELERLKP ALSPSPLPIL ICTSQPRSHE MNHFSVDTED SFASLLELAA NNDVKGFKRL  60
IECDPSSVDE VGLWYGRRKG SKQMVNEQRT PLMVAATYGS IDIMKLVLSL SDADVNRPCG  120
LDRSTALHCA ASDFQLKLKS NDAPVSSASE KKEYPVDPSL PDIKNSIYST DEFRMYSFKV  180
RPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPD FRKGACRRGD MCEYAHGVFE  240
CWLHPAQYRT RLCKDGTNCS RRVCFFAHTA EELRPLYVST GSAVPSPRSS TSSAMDFAAA  300
MNMLPGSPSS MSVMSPSPFT PPMSPSANGI SHSSVAWPQP NIPALHLPGS NLQSSRLRSS  360
LNARDIPMDD FDMLPDFDQQ QQLLNELSCL SPQPINSNTT DLQYGCTELQ YGLIVKPLTP  420
SNLDDLFSAE SSSPRYADPT LTSAVFSPTH KSAVLNQFQQ QQSLMSPRNV EPISPMGSRI  480
SMLAQREKQQ FRSLSSRELG SNSAVAAAAA ASANSWSKWG SPNGKLDWPV GADEVGKLRR  540
SSSFELGNNG EEPDLSWVQS LVKESPTEIK DKLATSVSNV GAAGSSNEGS NMSTQMESVD  600
HAVLGAWLEQ MQLDHLVAQQ N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17582GRRKGSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_09493
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1558850.0AC155885.2 Medicago truncatula chromosome 7 clone mth2-10p23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211979.10.0zinc finger CCCH domain-containing protein 30 isoform X1
RefseqXP_020211980.10.0zinc finger CCCH domain-containing protein 30 isoform X2
RefseqXP_020211981.10.0zinc finger CCCH domain-containing protein 30 isoform X2
RefseqXP_029126792.10.0zinc finger CCCH domain-containing protein 30 isoform X2
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A151TU600.0A0A151TU60_CAJCA; Zinc finger CCCH domain-containing protein 30
STRINGXP_002526717.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]