PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_08519
Common NameKK1_008770
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family Trihelix
Protein Properties Length: 869aa    MW: 96261.5 Da    PI: 8.7665
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_08519genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.42.1e-19777857186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W+ +e+++Li +r e+ +r++  k +++lWee+s+k+ + g++rsp qCk+ w +l+ +y+ ik+ + +     +++++yf+++e
  C.cajan_08519 777 KWKTEEIKKLIGMRGELRDRFQVVKGRMALWEEISQKLLADGISRSPGQCKSLWTSLALKYEGIKKEKDG-----EKSWQYFEDME 857
                    7****************************************************************99998.....356*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.101.4E-6773323IPR001279Metallo-beta-lactamase
SuperFamilySSF562817.38E-7274488IPR001279Metallo-beta-lactamase
SMARTSM008494.3E-2586283IPR001279Metallo-beta-lactamase
PfamPF127066.3E-1097233IPR001279Metallo-beta-lactamase
PfamPF075212.1E-7427460IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500907.875770834IPR017877Myb-like domain
PfamPF138371.0E-16775859No hitNo description
CDDcd122034.01E-18776841No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MAALTSLSLS LRPLSLRLKP TATLSAALPG STDGAKTKAP RRRAGRIEGP RKSMEDSVQR  60
KMEQFYEGSD GPPLRVLPIG GLGEIGMNCM LVGNHDRYIL IDAGVMFPDY DELGVQKIIP  120
DTTFIRKWSH KIEALVITHG HEDHIGALPW VIPALDSNTP IFASSFTMEL IRKRLKEHGI  180
FVPSRLKVFR TRKKFVAGPF EIEPIRVTHS IPDCCGLVLR CSDGTILHTG DWKIDETPLD  240
GKVFDREALE ELSKEGVTLM MSDSTNILSP GRTTSESVVA DALLRHISAS KGRVITTQFA  300
SNLHRLGSVK AAADLTGRKL VFVGMSLRTY LDAAWKDGKA PIDPSTLVKA EDIDAYAPKD  360
LLIVTTGSQA EPRAALNLAS YGSSHAFKLT KEDVVLYSAK VIPGNESRVM EMLNRISEIG  420
STIVMGKNEN LHTSGHAYRG ELEEVLRIVK PQHFLPIHGE LLFLKEHELL GKSTGIRHTA  480
VIKNGEMLGV SHLRNRRILS NGFISLGKEN LQLKYSDGDR AFGTSSELFI DERLRIALDG  540
IIVISMEIFR PKILDSLTEN TLKGKIRITT RCLWLDKGKL MDALYKAARA ALSSCPVKSP  600
LAHIERTVSE VLRKMVRKYS GKRPEVIAIA IENPSGILAD EMNTKLSGKK AHVGLGISSV  660
RKAVDEHEKG NPSTTLQARD DSIDNASVAE RDLSEGDNSA SGAEGDLSQS EESEEFWKPF  720
VTSLPIEESI GADSGYVSQK EHKSNLKKDD SKDMDEAKYE ETCNSEPKSS KSVKRNKWKT  780
EEIKKLIGMR GELRDRFQVV KGRMALWEEI SQKLLADGIS RSPGQCKSLW TSLALKYEGI  840
KKEKDGEKSW QYFEDMERIM SDKEIPAAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A3e-877463219560RIBONUCLEASE J
5a0t_B3e-877463219560RIBONUCLEASE J
5a0v_A3e-877463219560RIBONUCLEASE J
5a0v_B3e-877463219560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_08519
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020210778.10.0ribonuclease J isoform X1
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A151TR910.0A0A151TR91_CAJCA; Ribonuclease J
STRINGGLYMA04G37020.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50993450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]