PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_08121
Common NameKK1_008365
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 274aa    MW: 31735.1 Da    PI: 9.3859
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_08121genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.4e-121771899
                   --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                   +p++f++e+ +g+   s  + l  ++g +W++++  +k++  ++lt+ Wk+F++   L++   +vFk++g+s+f  +v ++++
  C.cajan_08121  1 IPRSFVNECwEGI--ISNPVLLLLPNGAKWNLRC--KKHDADVWLTNKWKKFAEFYSLDQDHLLVFKYVGKSQF--HVIILDQ 77
                   8*********666..445699999**********..**********************************9999..8888775 PP
2B356.93.9e-181512152690
                    T..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
             B3  26 h..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                    +  g++   ++ ++l+++++r+W+ kl+++++ g+ +l++GWk+Fvk+n+L+ gD+++F+ +++  + 
  C.cajan_08121 151 FdnGMP---KIRVILRTSDNRTWDAKLCVNRCNGQLYLSTGWKDFVKDNNLEIGDVCIFEQMKSgGTI 215
                    243444...357************************************************66643444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.67E-12176No hitNo description
PfamPF023629.0E-10176IPR003340B3 DNA binding domain
PROSITE profilePS5086312.59178IPR003340B3 DNA binding domain
SMARTSM010190.0065178IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-15185IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-15185IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-8113225IPR003340B3 DNA binding domain
CDDcd100176.09E-16147222No hitNo description
SuperFamilySSF1019366.47E-17151220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.9E-15151222IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-15154219IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449160225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
IPRSFVNECW EGIISNPVLL LLPNGAKWNL RCKKHDADVW LTNKWKKFAE FYSLDQDHLL  60
VFKYVGKSQF HVIILDQTGL EIRYPLMEVT SDGEENGSNS LRQSKRAKPP LPFSRSTKKL  120
KTNPRKEPKS FPRQDVETRG TQSRRTHVHQ FDNGMPKIRV ILRTSDNRTW DAKLCVNRCN  180
GQLYLSTGWK DFVKDNNLEI GDVCIFEQMK SGGTISYTVL LFHGEEESSS PIIIPGDMQF  240
AILWIHYFIF IIIIIIIIII IIIIIIIIFM LISL
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_08121
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020210838.11e-113B3 domain-containing transcription factor VRN1
TrEMBLA0A151TQ450.0A0A151TQ45_CAJCA; B3 domain-containing transcription factor VRN1 (Fragment)
STRINGGLYMA10G42787.12e-72(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-15B3 family protein