PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_08120 | ||||||||
Common Name | KK1_008364 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | B3 | ||||||||
Protein Properties | Length: 141aa MW: 16554.6 Da PI: 5.5437 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46 | 9.8e-15 | 4 | 79 | 17 | 98 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p+kf++++g s + ++ ++g +W+v +++ g+++++kGWkeFv+ L+ g v+Fk++g+s v +++ C.cajan_08120 4 KIPNKFTQKCGRG--LSNPVFIKPPDGTEWKVHW--TNQNGEVWFKKGWKEFVENYSLDHGHLVLFKYEGTSHM--DVLILD 79 59********744..6667***************..********************************986544..666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0013 | 1 | 81 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.451 | 1 | 81 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-19 | 3 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-17 | 4 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.5E-12 | 5 | 72 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.17E-12 | 5 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
YSQKIPNKFT QKCGRGLSNP VFIKPPDGTE WKVHWTNQNG EVWFKKGWKE FVENYSLDHG 60 HLVLFKYEGT SHMDVLILDQ TELEIHYPLC DTPQENDNLN QSDDDESSVV VLDEWPHQNA 120 VTQSRPRKKM RCMDPIVCLF F |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 130 | RPRKKMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_08120 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020210735.1 | 4e-93 | B3 domain-containing protein At1g49475 | ||||
TrEMBL | A0A151TQ65 | 1e-102 | A0A151TQ65_CAJCA; B3 domain-containing protein At1g49475 family (Fragment) | ||||
STRING | GLYMA20G24268.1 | 2e-48 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 2e-18 | B3 family protein |