PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_08081 | ||||||||
Common Name | KK1_008325 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 239aa MW: 27105.1 Da PI: 7.3205 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44 | 5.2e-14 | 121 | 165 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky C.cajan_08081 121 PWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKY 165 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0049 | 13 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.03E-9 | 15 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.226 | 17 | 63 | IPR017877 | Myb-like domain |
CDD | cd00167 | 2.07E-4 | 17 | 59 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-4 | 36 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.947 | 114 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.1E-17 | 116 | 171 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-17 | 117 | 169 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-11 | 118 | 168 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-11 | 118 | 164 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.04E-10 | 121 | 166 | No hit | No description |
Pfam | PF00249 | 6.5E-12 | 121 | 165 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MFPETSATRW PTHPTQWTRF HDKLFERALL AVPEDMPDRW QKIADQVPGK SAAEVRDHYD 60 ALVHDVFEID SGRVEVPSYV DDSPPRAPTA AAGTSSWDSA NQISFGSKPK QGDNERKKGT 120 PWTEEEHRLF LIGLSKFGKG DWRSISRNVV VTRTPTQVAS HAQKYFLRQN SVKKERKRSS 180 IHDITTVDSN SVPVPIDQNW VPPPGTASVQ QPQDMQQYPP SNLHDQMGQF GYSNYGFQM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_08081 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB083028 | 0.0 | AB083028.1 Glycine max mRNA for syringolide-induced protein 1-3-1B, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020212063.1 | 1e-179 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 4e-58 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A151TQ52 | 1e-177 | A0A151TQ52_CAJCA; Myb-like protein J | ||||
STRING | GLYMA20G24600.1 | 1e-147 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6068 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-84 | MYB family protein |
Publications ? help Back to Top | |||
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