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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_07807 | ||||||||
Common Name | KK1_008034 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | B3 | ||||||||
Protein Properties | Length: 135aa MW: 15099.2 Da PI: 10.084 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64.3 | 1.8e-20 | 32 | 121 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ff vl+ s+v+ ++ +v+p kf++++ + +++s ++ l+ ++gr+W+v++ r+++ + +GW++F+++n+LkegD++ F l+++++ + v++ C.cajan_07807 32 FFIVLKASYVNGHS-VVIPSKFVKKYLK-EKRSDDILLRVLDGRTWTVNF--RNGR----FCAGWNKFASDNHLKEGDVCAFGLTKSQGHCFEVTI 119 88999999999998.***********44.45778****************..8888....789********************9965444446666 PP E- CS B3 97 fr 98 +r C.cajan_07807 120 IR 121 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.3E-24 | 25 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-22 | 26 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.99E-24 | 30 | 121 | No hit | No description |
PROSITE profile | PS50863 | 13.056 | 31 | 123 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-15 | 32 | 123 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-18 | 32 | 120 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MGEDRGGATK SVKVEQVTSK VVETSRSKAP SFFIVLKASY VNGHSVVIPS KFVKKYLKEK 60 RSDDILLRVL DGRTWTVNFR NGRFCAGWNK FASDNHLKEG DVCAFGLTKS QGHCFEVTII 120 RISEETHLSG NNSWS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_07807 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029128933.1 | 4e-87 | B3 domain-containing transcription factor VRN1 | ||||
Refseq | XP_029128935.1 | 4e-87 | B3 domain-containing transcription factor VRN1 | ||||
Refseq | XP_029128937.1 | 4e-87 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A151U7N3 | 8e-95 | A0A151U7N3_CAJCA; B3 domain-containing protein REM19 | ||||
STRING | XP_007143081.1 | 7e-27 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 8e-13 | related to vernalization1 1 |