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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_07494 | ||||||||
Common Name | KK1_007699 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TCP | ||||||||
Protein Properties | Length: 309aa MW: 35083.2 Da PI: 8.4805 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 139.5 | 2.6e-43 | 27 | 165 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....seceaesssssasnsssg..... 88 +kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+L fdk+s+t+eWL+++++ aikel+++++s + +c+ + s+ s++n + C.cajan_07494 27 VAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELAQSKNSGSssggDKCSCDPSVDSNNN---Kslvas 119 689*************************************************************65555334444422222222222...123355 PP TCP 89 .kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 + ++ k k sq+++ + +ke r++arararert km+ + C.cajan_07494 120 gGHGSKGRKLKWSQRDDV-CVQTKKELRERARARARERTCYKMCSSR 165 555555556666666665.588899*******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.5E-40 | 28 | 163 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.814 | 29 | 87 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.052 | 143 | 160 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MLEHDANTNY GSHYGSISNF LTQKPAVAKK DRHSKIHTSQ GLRDRRVRLS SEIARKFFDL 60 QDMLEFDKPS NTLEWLFTKS ENAIKELAQS KNSGSSSGGD KCSCDPSVDS NNNKSLVASG 120 GHGSKGRKLK WSQRDDVCVQ TKKELRERAR ARARERTCYK MCSSRRVQQE FDERCPATAT 180 TQMLHQLRSS IQPEPDDACA RWVQPYDNPY VIDSEAPRDG FNVIEESIMI KRNMRPSSLM 240 ASHHQNQNQN LVIPRDASFN NNEYCAPLLP YSTPNWDTSG LVNGCSNFCG IGSMNLSTCF 300 MNPWYVFNF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 155 | RERARARARER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_07494 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020232454.2 | 0.0 | transcription factor DICHOTOMA isoform X1 | ||||
Refseq | XP_029128870.1 | 0.0 | transcription factor DICHOTOMA isoform X2 | ||||
TrEMBL | A0A151U6U2 | 0.0 | A0A151U6U2_CAJCA; Transcription factor TCP1 | ||||
STRING | XP_007143293.1 | 1e-175 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-24 | TCP family protein |