PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_07398 | ||||||||
Common Name | KK1_007602, KK1_007626 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 83aa MW: 9547.21 Da PI: 10.3246 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.2 | 2.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+ + rqvtfskRr+g+ KKA+ELSvLCda+vavi+fs++g+lye+ss C.cajan_07398 9 KKIEDATSRQVTFSKRRTGLVKKANELSVLCDAQVAVIVFSQNGRLYEFSS 59 68***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.3E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.796 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.16E-34 | 3 | 60 | No hit | No description |
SuperFamily | SSF55455 | 6.8E-29 | 3 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MVRGKVQMKK IEDATSRQVT FSKRRTGLVK KANELSVLCD AQVAVIVFSQ NGRLYEFSSS 60 EYVFLHFSKF MFCLRISTSI DML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-17 | 1 | 83 | 1 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-17 | 1 | 83 | 1 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-17 | 1 | 83 | 1 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-17 | 1 | 83 | 1 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-17 | 1 | 83 | 1 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-17 | 1 | 83 | 1 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-17 | 1 | 83 | 1 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-17 | 1 | 83 | 1 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-17 | 1 | 83 | 1 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-17 | 1 | 83 | 1 | 85 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_07398 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020232325.1 | 9e-55 | MADS-box protein AGL42 | ||||
Swissprot | Q9FIS1 | 4e-29 | AGL42_ARATH; MADS-box protein AGL42 | ||||
TrEMBL | A0A151U6S2 | 2e-53 | A0A151U6S2_CAJCA; Agamous-like MADS-box protein AGL14 | ||||
STRING | evm.model.supercontig_4.204 | 3e-31 | (Carica papaya) | ||||
STRING | XP_007143357.1 | 3e-31 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.4 | 1e-31 | AGAMOUS-like 42 |