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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_06940 | ||||||||
Common Name | KK1_007136 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | Trihelix | ||||||||
Protein Properties | Length: 515aa MW: 59742.6 Da PI: 6.4211 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 56.6 | 6.8e-18 | 97 | 177 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 Wt++evlaL+++r++me+++ + We+vs+k++e g+++s+++Ckek+e+ ++++ +i+ g++++ t ++ ++++++++le C.cajan_06940 97 WTNDEVLALLRIRSSMESWFPEL-----TWEHVSRKLAELGYKKSAEKCKEKFEEESRYFNNINFGKNNNtTTTTNNNYRFLSELE 177 ********************987.....9***********************************9999995677888999999997 PP | |||||||
2 | trihelix | 97.4 | 1.2e-30 | 355 | 440 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+k+evlaLi++r++ ++ +++k k plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql C.cajan_06940 355 RWPKDEVLALINLRSSSVTNNNEEKegNKVPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQL 440 8*************977766665433399*******************************************8.9999********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 21 | 93 | 150 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 5.1E-12 | 95 | 164 | No hit | No description |
PROSITE profile | PS50090 | 6.144 | 96 | 148 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 6.748 | 348 | 414 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0089 | 352 | 416 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.41E-24 | 354 | 421 | No hit | No description |
Pfam | PF13837 | 2.2E-20 | 354 | 440 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MFDGVPDQFH QFITPRTSLP LHLPFPLHAS AAPNTTFPTN FDPYNPSHNL PLQPNLLHPL 60 HHKDHEEKEE TSTVPMNFEI QRDQRQQQQL PELVDPWTND EVLALLRIRS SMESWFPELT 120 WEHVSRKLAE LGYKKSAEKC KEKFEEESRY FNNINFGKNN NTTTTTNNNY RFLSELEQLY 180 QGGGGDHQAV TEEKTQQQDK MGQHASEEGD SRNVVAKQND DAVKKTKERK RKRPDRFEIF 240 KGFCESIVHK MMAQQEEMHN KLLEDMMKRD EEKFTREEAW KKQEMEKMNK ELDMMAREQA 300 IAGDRQANII QILNKFSATS PASQTLKVTS SLHNNPLETN SIMNKGNEKD DTGRRWPKDE 360 VLALINLRSS SVTNNNEEKE GNKVPLWERI SQGMSELGYK RSAKRCKEKW ENINKYFRKT 420 KDVNKKRSLD SRTCPYFHQL SCLYNQGKLV LQSESQLNDN PPENPDEQVP QDQTQANESS 480 SPQVGSGGFS VQQQQVDHGG EKPLMQVPSL DFDQF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_06940 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF221754 | 1e-149 | EF221754.1 Glycine max trihelix transcription factor (GT-2B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020210057.1 | 0.0 | trihelix transcription factor GTL2 | ||||
Swissprot | Q8H181 | 7e-96 | GTL2_ARATH; Trihelix transcription factor GTL2 | ||||
TrEMBL | A0A151U574 | 0.0 | A0A151U574_CAJCA; Uncharacterized protein | ||||
STRING | GLYMA20G36680.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5043 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 1e-96 | Trihelix family protein |
Publications ? help Back to Top | |||
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