PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_06835 | ||||||||
Common Name | KK1_007027 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NF-YC | ||||||||
Protein Properties | Length: 230aa MW: 25481.6 Da PI: 6.7987 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 44 | 4.7e-14 | 83 | 119 | 2 | 35 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkaded 35 l++fw++q iek+tdfknh+lPlarikki+kaded C.cajan_06835 83 LQAFWANQyqeIEKVTDFKNHSLPLARIKKIMKADED 119 89*****99999************************9 PP | |||||||
2 | NF-YC | 42.4 | 1.6e-13 | 118 | 152 | 67 | 101 |
NF-YC 67 eenkrrtlkksdiaaavtrtdifdflvdivprdel 101 e+nkrrtl+k+diaaa+trtdifdflvdivpr++l C.cajan_06835 118 EDNKRRTLQKNDIAAAITRTDIFDFLVDIVPREDL 152 589*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.18E-14 | 66 | 143 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.5E-8 | 96 | 119 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 9.5E-10 | 120 | 149 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MDHQGHGHGQ NPSMGVVGSG PQLTFGSNPY QTSHLTGSPG MVVASPGTIQ STGQPPATQL 60 GQQYQLANQH IHQQQQQQLQ QRLQAFWANQ YQEIEKVTDF KNHSLPLARI KKIMKADEDN 120 KRRTLQKNDI AAAITRTDIF DFLVDIVPRE DLKDEVLASM PRGTVPVTGP AEALPYCYMP 180 PQHAQQVGTA GVIMGNKPVM DPYAQQSHPY NMAPQMWPQP PDQQQSSPDQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 127 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_06835 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-108 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029128767.1 | 1e-149 | nuclear transcription factor Y subunit C-3 isoform X1 | ||||
Swissprot | Q8L4B2 | 9e-48 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A151U4V1 | 1e-168 | A0A151U4V1_CAJCA; Nuclear transcription factor Y subunit C-9 | ||||
STRING | XP_007144748.1 | 1e-130 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 5e-48 | nuclear factor Y, subunit C9 |