PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_06648

Common Name

KK1_006836

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NAC

Protein Properties

Length: 276aa MW: 31817.8 Da PI: 6.9131

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_06648	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.7	2.8e-50	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrF P+deelv +yL kkv+++++ ++ ++d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++v++ C.cajan_06648 10 LPPGFRFYPSDEELVLHYLYKKVTNEEVLK-GTLMDIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVFDPa 104 79**********************9655.78***********88888999**********************************97 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++e+vg++ktLvfy++rap+g kt W+mhe+rle C.cajan_06648 105 TREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138 8889*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-60	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	58	10	156	IPR003441	NAC domain
Pfam	PF02365	2.5E-27	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MGLRDIGASL PPGFRFYPSD EELVLHYLYK KVTNEEVLKG TLMDIDLHTC EPWQLPEVAK 60 LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV FDPATREVVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKGKTD NSAKLMYETT VPSLTLSSPT 180 NQTTPVGYNQ LVPFSSSMGT HHHYHHHQNQ NQNQNSLMSL LQFSRETNTN SSTVTQISPK 240 CDDGYEFLWD MDLDDGVASN MDGMRFEVDN NSVVLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	9	156	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-47	9	156	19	168	NAC domain-containing protein 19
3swm_B	1e-47	9	156	19	168	NAC domain-containing protein 19
3swm_C	1e-47	9	156	19	168	NAC domain-containing protein 19
3swm_D	1e-47	9	156	19	168	NAC domain-containing protein 19
3swp_A	1e-47	9	156	19	168	NAC domain-containing protein 19
3swp_B	1e-47	9	156	19	168	NAC domain-containing protein 19
3swp_C	1e-47	9	156	19	168	NAC domain-containing protein 19
3swp_D	1e-47	9	156	19	168	NAC domain-containing protein 19
4dul_A	1e-47	9	156	16	165	NAC domain-containing protein 19
4dul_B	1e-47	9	156	16	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_06648

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020203012.1	0.0	protein CUP-SHAPED COTYLEDON 3
Swissprot	Q84TE6	4e-61	NAC22_ARATH; NAC domain-containing protein 21/22
Swissprot	Q9S851	5e-61	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A151U4K8	0.0	A0A151U4K8_CAJCA; Protein CUP-SHAPED COTYLEDON 3
STRING	XP_004495089.1	1e-175	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4381	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	4e-93	NAC domain containing protein 74

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]