PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_06359

Common Name

KK1_006537

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Protein Properties

Length: 309aa MW: 36046.5 Da PI: 6.8709

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_06359	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	104	8.1e-33	68	172	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k ltpsdv+k++rlv+pk++ae++ ++ + ++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ ++ C.cajan_06359 68 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgggDSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRADNH 163 99**************************76444557889********************************************8877999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +l+++++r+ C.cajan_06359 164 RLFIGWRRR 172 9****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.5E-41	60	176	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.44E-31	65	173	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.05E-29	67	163	No hit	No description
SMART	SM01019	1.4E-26	68	173	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.128	68	173	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-29	68	172	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010073	Biological Process	meristem maintenance
GO:0010358	Biological Process	leaf shaping
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MSVNHYSMDL PETTLWWPHQ QEQQQEQEQE QQPFHGNLNK EEEEEEYEAK ETTTTKQEET 60 EEEKEAMFEK PLTPSDVGKL NRLVIPKQHA EKYFPLGGGD SAECKGLLLS FEDESGKCWR 120 FRYSYWNSSQ SYVLTKGWSR YVKDKRLDAG DVVLFERHRA DNHRLFIGWR RRPHADNATA 180 PAHVSRTLPH ATPPPAVPLD WTRPSFYSAH PYPAHHHPFP YQHAGRGTQG QNQRTSPSSR 240 VLRLFGVNME CQAEHDSGPS TPQCSYNSNN MPTTQGTDTH HHHFYHHHHH HQPSSNPSPH 300 MVRHQPYYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-51	63	175	3	116	B3 domain-containing transcription factor NGA1
5os9_B	3e-51	63	175	3	116	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_06359

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-110	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020206587.1	0.0	B3 domain-containing protein At2g36080
TrEMBL	A0A151U3H1	0.0	A0A151U3H1_CAJCA; B3 domain-containing protein At5g06250 family
STRING	GLYMA10G08871.1	1e-131	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5739	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11580.1	4e-59	B3 family protein