PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_05991
Common NameKK1_006142
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YA
Protein Properties Length: 348aa    MW: 39222.1 Da    PI: 7.1072
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_05991genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.52.6e-29178249158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk..............ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    +ep+YVNaKQyq+Il+RRq+Rak+e ekk              l++ s +pylheSRh+hA+rR+Rg+gGrF
  C.cajan_05991 178 QEPVYVNAKQYQGILRRRQARAKAELEKKlikvrkyfyphpgmLTSISSQPYLHESRHQHAMRRARGNGGRF 249
                    69*****************************************8899************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-29176252IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115232.894177252IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.6E-27179249IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860182202IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MQSKSETENQ LKSNSHSFTP NNAYSEPWWR GIQYNPVPQA MLGVNASNSS SLERLNGDSE  60
SSEDRSLSNN GLNEEDDNAT KESQPTAPRK SGNYGQDHQA MQHSSSPAPS VHDDYLTEAP  120
QLDLVGHSIV VSLCPHVIFY YYYFGMKRRC KDHSFMSGYA PFIGMPHARM ALPLEMAQEP  180
VYVNAKQYQG ILRRRQARAK AELEKKLIKV RKYFYPHPGM LTSISSQPYL HESRHQHAMR  240
RARGNGGRFA KKTEVEASNH MNKENDKGSD PVPSSQSINS SGFEPLPSDC AETWNSNVQQ  300
DARGSQVHER FEEHNYADGE RVEEGDCSGQ QRGSISSEHT SQRRLAIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-15178269274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_05991
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954571e-88BT095457.1 Soybean clone JCVI-FLGm-25M11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020209672.10.0nuclear transcription factor Y subunit A-1
RefseqXP_020209676.10.0nuclear transcription factor Y subunit A-1
RefseqXP_029124839.10.0nuclear transcription factor Y subunit A-1
TrEMBLA0A151U2J00.0A0A151U2J0_CAJCA; Nuclear transcription factor Y subunit A-1
STRINGGLYMA02G47380.51e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.48e-64nuclear factor Y, subunit A1