PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_05574
Common NameKK1_005714
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 340aa    MW: 40041.6 Da    PI: 4.815
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_05574genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86.1e-161771694
                   EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
             B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                   + +p+ f++   +k++ + +++l++ sgr+W vk   r+ +++ +l +GWk F ++n +   Df+vFk++g++ef+  v
  C.cajan_05574  1 MLIPNVFVKWTRLKERIPEDVILRNGSGRVWCVKT--RRIGDKLFLDEGWKAFREENCVGKADFMVFKYNGNKEFKVIV 77
                   57999999888999*********************..**********************************99996655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023622.8E-13177IPR003340B3 DNA binding domain
CDDcd100179.90E-11178No hitNo description
PROSITE profilePS5086314.015181IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-14179IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-15380IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0064781IPR003340B3 DNA binding domain
SuperFamilySSF1019361.43E-8198238IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-8236324IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-8265322IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MLIPNVFVKW TRLKERIPED VILRNGSGRV WCVKTRRIGD KLFLDEGWKA FREENCVGKA  60
DFMVFKYNGN KEFKVIVLEL STQCEKTVIK SEVEEEENMD EGKVAAEEDE EEHEGKTDDE  120
DGEEEEDDDN NSDNDYNDND EFTEMEEESE EEHNFQYMKA SRSQSNSRAC KRETATSSTP  180
KIEDPQIEDY EFDPEMYIQS GNPYFEAKVY KSRRNEMHVP ANVLRNSSLT FPEKITLLPC  240
QCSQRQDIQR NELRKYHLSL SQQTPICRRY WEATKVSKWN DGRVCVRGWG NFCRRHKIKE  300
KDVCICEIIS GEDQVIRTIR VHVLERMNRL RNCTSSKIGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_05574
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020210056.10.0B3 domain-containing protein REM20
TrEMBLA0A151U1G30.0A0A151U1G3_CAJCA; B3 domain-containing protein REM21
STRINGXP_007141725.11e-109(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.27e-16B3 family protein