PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_05550

Common Name

KK1_005688

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

LBD

Protein Properties

Length: 178aa MW: 20000.8 Da PI: 7.4055

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_05550	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.5	6.4e-40	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l+++la C.cajan_05550 11 SCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAI 106 6*********************************************************************************************99 PP DUF260 97 lkee 100 +k++ C.cajan_05550 107 AKDR 110 9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.425	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-39	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MKSYEPRSSS SCAACKFLKR RCIPNCIFAP YFRSDECKKF AKVHKVFGAS NVSKILVEVP 60 EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL QHDLAIAKDR LARYVAAATA 120 TTTITTDHSL NAHVSLPPLP EFFSCGDFND NFCHSSSSQL SLTRHETVDD FIQIPYIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-47	6	114	6	114	LOB family transfactor Ramosa2.1
5ly0_B	5e-47	6	114	6	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_05550

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235882	1e-149	AC235882.2 Glycine max clone GM_WBc0011M13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020210306.1	1e-131	LOB domain-containing protein 21
Swissprot	Q9SRL8	1e-61	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A151U1A3	1e-129	A0A151U1A3_CAJCA; LOB domain-containing protein 21
STRING	GLYMA14G06270.1	1e-107	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-63	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]