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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_05546 | ||||||||
Common Name | KK1_005684 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 26951.3 Da PI: 7.7019 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 1e-17 | 10 | 55 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+++G ++W+ I++ ++ gR++k+c++rw + C.cajan_05546 10 KGSWSPQEDATLLKLVNEHGARNWSVISSGIP-GRSGKSCRLRWCNQ 55 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 55.9 | 9.9e-18 | 64 | 106 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++v+a++ +G++ W+tI+r ++ gRt++ +k++w++ C.cajan_05546 64 PFTPAEDRIIVKAHAIHGNK-WATISRLLP-GRTDNAIKNHWNST 106 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.611 | 5 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.67E-30 | 8 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-15 | 9 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-18 | 10 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 11 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.94E-14 | 12 | 54 | No hit | No description |
PROSITE profile | PS51294 | 24.674 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 4.8E-15 | 61 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-11 | 64 | 107 | No hit | No description |
Pfam | PF00249 | 1.3E-14 | 64 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 64 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MIDSGDDRVK GSWSPQEDAT LLKLVNEHGA RNWSVISSGI PGRSGKSCRL RWCNQLSPEV 60 QHRPFTPAED RIIVKAHAIH GNKWATISRL LPGRTDNAIK NHWNSTLRRH RAASASSDSP 120 PPPAKRPSVF DTFRPLKKLC IEKETEEERL ASTVTTSLSL FPPGERSEED EEEKEKEEEF 180 EVNTIMSDNQ KRFIQVIRRM IAEEVRNYFH TLRLQERDNP FLQHDLDFHP IVPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-37 | 9 | 109 | 3 | 103 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_05546 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020229268.1 | 1e-174 | transcription factor MYB44 | ||||
TrEMBL | A0A151U172 | 1e-172 | A0A151U172_CAJCA; Transcription factor MYB44 | ||||
STRING | GLYMA02G43280.1 | 1e-99 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11600 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 4e-51 | myb domain protein 77 |