PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_05463
Common NameKK1_005598
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family B3
Protein Properties Length: 601aa    MW: 67029 Da    PI: 8.0576
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_05463genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.4e-17274374199
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                    f+k+l++sd+++ grlvlpk++ae +   + + e+  l++ d  g++W +++++  +++s++yvl+ G     +a +L++gD+v+F+ ++  ++++
  C.cajan_05463 274 FEKTLSSSDASRIGRLVLPKSCAEVYfpPITQSEGLPLQMLDVMGNEWIFQFRFwpNNNSRMYVLE-GVTPCMQALQLNAGDTVIFSQMH-PGGKY 367
                    99*********************999*9555556677***************9989999999***9.********************666.9999* PP

                    EEEEE-S CS
             B3  93 vvkvfrk 99 
                    v++++r+
  C.cajan_05463 368 VFGFRRA 374
                    ***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-27269376IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-19272374IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-20272373No hitNo description
PROSITE profilePS508639.714274375IPR003340B3 DNA binding domain
SMARTSM010191.2E-19274375IPR003340B3 DNA binding domain
PfamPF023628.5E-14274374IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MCRSVCCRSA YANSIFCETF HKHQAGWREC NDCGKPIHCG CIVSRSLFEY RDSGGIDCVT  60
CAQASQLRLM RATENLNAVR SIKNNANDRH TEHIDGRLMV DGAGKGKMVQ LCRIVEASEP  120
SRWPQSEREV IDSCNGLNKQ DDTRFSNVMK PPSHSLAITT SENNGPTWVT GSMDKSHPLN  180
ISIGTSSGNS VLTSALESLE ERLEGKALSS PFHQGQRSLS MKMEGLIPPQ ERIARPPADG  240
IGKSLLLSRY WPKMTDHELE KLSECMKSIV VPLFEKTLSS SDASRIGRLV LPKSCAEVYF  300
PPITQSEGLP LQMLDVMGNE WIFQFRFWPN NNSRMYVLEG VTPCMQALQL NAGDTVIFSQ  360
MHPGGKYVFG FRRASENMSL LNQDAMPLEL YIQVSVSWLI NLCDLILLRN PRQTMMVFVL  420
FWIHLFYPLM IQLLFNKFII SALAVIPQSL NSASKEMSPK ELDNILTTSK DLKKRRSIRK  480
PDTAQEHEPH GLNALASAAA LGDDLVEPVG ATTKHPRHRL GCSCIVCSQP PSGKGKHKPT  540
CTCIACVTMK RRCNTLMARK RKRGQSDDDA LARDEGDTNG APRDQIDLNS HPYPEDMQVD  600
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-562523752125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1549562KRRCNTLMARKRKR
2557563ARKRKRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_05463
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020210182.10.0B3 domain-containing transcription repressor VAL1
TrEMBLA0A151U1510.0A0A151U151_CAJCA; B3 domain-containing protein Os07g0679700 family
STRINGGLYMA02G40280.21e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1597856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-87HSI2-like 1