PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_05316 | ||||||||
Common Name | KK1_005448 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NF-YC | ||||||||
Protein Properties | Length: 206aa MW: 23443.3 Da PI: 7.7122 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 32.9 | 1.4e-10 | 66 | 103 | 1 | 35 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkaded 35 ql++fw+kq i++at+fk ++Pl+ri+ki+kaded C.cajan_05316 66 QLNNFWAKQcqeIGEATNFKTPNMPLSRIRKIMKADED 103 799*****9888899*********************98 PP | |||||||
2 | NF-YC | 33.4 | 9.7e-11 | 103 | 136 | 67 | 100 |
NF-YC 67 eenkrrtlkksdiaaavtrtdifdflvdivprde 100 +enk++tl+ksdia+a+t+ d+fdflvdi prd+ C.cajan_05316 103 DENKKKTLQKSDIASAITKNDMFDFLVDIFPRDD 136 699*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.08E-11 | 66 | 128 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.4E-4 | 82 | 103 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.5E-8 | 104 | 134 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MDQNQQGQGV NHPTQAARGK NKYEFNPMVG PSNPPTQIVG PSNLSPHPRD APEYTNQLQQ 60 DVLQQQLNNF WAKQCQEIGE ATNFKTPNMP LSRIRKIMKA DEDENKKKTL QKSDIASAIT 120 KNDMFDFLVD IFPRDDKLEH ADIPRRGTAP IENVPYYYYM SPHQYVARPP HGAPGMVMGR 180 PIPDQNQNGL QTRPFFPTPM RPTSDE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_05316 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020210452.1 | 1e-137 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_020210453.1 | 1e-137 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_029128497.1 | 1e-137 | nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q9SMP0 | 5e-24 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A151U0P0 | 1e-152 | A0A151U0P0_CAJCA; Nuclear transcription factor Y subunit C-1 | ||||
STRING | GLYMA08G15700.1 | 5e-52 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 2e-26 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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