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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_05151 | ||||||||
Common Name | KK1_005280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 219aa MW: 24433.4 Da PI: 4.7956 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l+d+ +++G +W++ ++ g+ R++k+c+srw +yl C.cajan_05151 14 KGTWTPEEDQILIDYLTRYGDSNWSLLPKLAGLERSGKSCRSRWMNYL 61 799*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.411 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-21 | 15 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.45E-17 | 15 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.61E-12 | 16 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MIRSTVSDTT GLRKGTWTPE EDQILIDYLT RYGDSNWSLL PKLAGLERSG KSCRSRWMNY 60 LRPGMKRVNN TQEEDETNMV ICGESESESM ISEKDRVIME ELVKGQEAAT QLKVLLENPI 120 GSEDSLSLSP EQLLENVLSS FSQTISIIKA SSFHSPPPAP APAPHVPGST SYSMSGDCSV 180 NWNRSQQGQR YLFLGFSCDL RNLKDVLTSN TPYTNVVNF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_05151 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020210037.1 | 1e-138 | transcription factor MYB118 | ||||
TrEMBL | A0A151U029 | 1e-161 | A0A151U029_CAJCA; Myb-related protein Myb4 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65230.1 | 4e-28 | myb domain protein 53 |