PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_04546 | ||||||||
Common Name | KK1_004661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 28193.7 Da PI: 5.5103 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.1e-20 | 116 | 166 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd s+ + +r++lg+f taeeAa a+++a+++++g C.cajan_04546 116 HYRGVRRRP-WGKYAAEIRDSSK---KgARVWLGTFETAEEAALAYDKAALRIRG 166 8********.**********543...34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-32 | 115 | 175 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.54E-29 | 115 | 174 | No hit | No description |
PROSITE profile | PS51032 | 23.999 | 116 | 174 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-23 | 116 | 176 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-37 | 116 | 180 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-14 | 116 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 117 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MAIQASSEEI LENVWAKIMS SDRRGDASVD SPHSLEEQPN PDGREGSMEI LKRLPSLGRW 60 ISMGADFWEQ SLYSILTAAT NTEDSGDTIM GIGTATRHKN KVEADGVRGE KVVAKHYRGV 120 RRRPWGKYAA EIRDSSKKGA RVWLGTFETA EEAALAYDKA ALRIRGPKAY LNFPLETVVV 180 AQASETGQKG AGWDTEKSYN GMKKRKEGFV DVVNEEPVTK KMARLDRVLE NELDVFVFQD 240 LGSDYLDNLL STF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-29 | 115 | 177 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-29 | 115 | 177 | 4 | 66 | ATERF1 |
3gcc_A | 1e-29 | 115 | 177 | 4 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_04546 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020210357.1 | 0.0 | ethylene-responsive transcription factor 1B | ||||
Swissprot | A0A3Q7I5Y9 | 6e-33 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A151TYH0 | 0.0 | A0A151TYH0_CAJCA; Ethylene-responsive transcription factor ERF091 family | ||||
STRING | GLYMA13G30710.1 | 1e-102 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9547 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 3e-25 | ERF family protein |
Publications ? help Back to Top | |||
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