PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

TALE

Protein Properties

Length: 371aa MW: 41947.1 Da PI: 6.9843

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_04460	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.9	1.9e-09	297	333	19	55
HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++++ LA+++gL+++q+ +WF N+R ++ C.cajan_04460 297 HYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 333 45679*****************************885 PP
2	ELK	38.2	3.1e-13	253	273	1	21
ELK 1 ELKhqLlrKYsgyLgsLkqEF 21 ELK qLlrKY+gyLgsLkqEF C.cajan_04460 253 ELKGQLLRKYRGYLGSLKQEF 273 9*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	8.6E-20	119	163	IPR005540	KNOX1
Pfam	PF03790	2.5E-22	120	159	IPR005540	KNOX1
SMART	SM01256	1.3E-25	168	219	IPR005541	KNOX2
Pfam	PF03791	1.1E-21	171	218	IPR005541	KNOX2
SMART	SM01188	5.9E-7	253	274	IPR005539	ELK domain
PROSITE profile	PS51213	11.139	253	273	IPR005539	ELK domain
Pfam	PF03789	5.8E-9	253	273	IPR005539	ELK domain
PROSITE profile	PS50071	13.167	273	336	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-19	275	348	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-12	275	340	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.9E-28	278	338	IPR009057	Homeodomain-like
CDD	cd00086	2.05E-12	285	337	No hit	No description
Pfam	PF05920	6.7E-17	293	332	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	311	334	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MEGGSNEASS VMGFGENTRS SGVCPMMMMP LVTSHHAGHH PLNPNLNNPN PNPNEYTNTN 60 SLFLPMPCTN NNHRTNRNTT GNSSIFQDNN HNTNAALGYF MEIHHHNNNN DGSSSSSSSA 120 VKAKIMAHPH YHRLLAAYIN CQKVGAPPEV VARLEEACAS AAVTMAGGTA SIGEDPALDQ 180 FMEAYCEMLI KYEQELSKPF KEAMLFLQRI ECQFKSLTIS SSDTACNEGT DRNISSEDVD 240 VHNIIDPQAE DQELKGQLLR KYRGYLGSLK QEFTKKRKKG KLPKEARQQL LEWWSRHYKW 300 PYPSESQKLA LAESTGLDQK QINNWFINQR KRHWKPSEDM QFVVLDPSNP RYYMENVLAN 360 HFPMDLSHTM L

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MEGGSNEASS VMGFGENTRS SGVCPMMMMP LVTSHHAGHH PLNPNLNNPN PNPNEYTNTN  60
SLFLPMPCTN NNHRTNRNTT GNSSIFQDNN HNTNAALGYF MEIHHHNNNN DGSSSSSSSA  120
VKAKIMAHPH YHRLLAAYIN CQKVGAPPEV VARLEEACAS AAVTMAGGTA SIGEDPALDQ  180
FMEAYCEMLI KYEQELSKPF KEAMLFLQRI ECQFKSLTIS SSDTACNEGT DRNISSEDVD  240
VHNIIDPQAE DQELKGQLLR KYRGYLGSLK QEFTKKRKKG KLPKEARQQL LEWWSRHYKW  300
PYPSESQKLA LAESTGLDQK QINNWFINQR KRHWKPSEDM QFVVLDPSNP RYYMENVLAN  360
HFPMDLSHTM L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	268	277	LKQEFTKKRK
2	274	278	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_04460

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857339	0.0	DQ857339.1 Glycine max KNT1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020224886.1	0.0	homeobox protein SBH1 isoform X4
Swissprot	P46608	1e-168	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	A0A151SU49	0.0	A0A151SU49_CAJCA; Homeobox protein SBH1
STRING	XP_007153990.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2039	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-128	KNOX/ELK homeobox transcription factor

Publications ? help Back to Top
Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508]