PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_04250
Common NameKK1_004354
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 487aa    MW: 51058.1 Da    PI: 8.1607
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_04250genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.57.9e-124873227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                   +++ C +++rtG+C yG rC+F+H++
  C.cajan_04250 48 DEADCIYYLRTGFCGYGTRCRFNHPR 73
                   6799********************96 PP
2zf-CCCH37.92.9e-1295119327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    ++ C++++rtG Ck+G++Ck++H++
  C.cajan_04250  95 QPVCQYYMRTGSCKFGASCKYHHPR 119
                    689********************96 PP
3zf-CCCH34.92.6e-11142165427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     +C+++ +tG+Ck+G++CkF+H++
  C.cajan_04250 142 QECSYYVKTGQCKFGATCKFHHPQ 165
                    68********************97 PP
4zf-CCCH37.73.4e-12306331227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++C+++++tG+Ck+G++C+++H+p
  C.cajan_04250 306 DQPECHYYMKTGECKFGPSCRYHHPP 331
                    689*********************97 PP
5zf-CCCH322.2e-10353377327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +lC ++ + G Ck+G+ CkF H++
  C.cajan_04250 353 APLCTHYTQRGVCKFGSACKFDHPM 377
                    68*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-44673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8544674IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-94873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-64975IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-55273IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-792119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77992120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-695120IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-1095119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-597119IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267138166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6140166IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-9141165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4144164IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5304331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.577304332IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9306331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6307333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4310330IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6350377IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587350378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6353380IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-8353377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5355375IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MERYGRASEG SQSDPSPEWT VGGGDAALEE SSWQLGLAAA ESYPLRPDEA DCIYYLRTGF  60
CGYGTRCRFN HPRDRSTVIG AATRTGGEFP ERVGQPVCQY YMRTGSCKFG ASCKYHHPRQ  120
AAGTATPVPL NYYGYPLRVG EQECSYYVKT GQCKFGATCK FHHPQPAGVQ VLAPSPVPPV  180
SPLPVPVPSP IYPTVQPPSG PSSQQYGVLV ARPPMIPGSV VQGPYGPMVV SPAMVPFSGW  240
GPYQAPATNP VLPSSTTSNV VSTQIYGITQ LPSSAATYTG PYQPSGSSIG PSGASQNEHP  300
FPERPDQPEC HYYMKTGECK FGPSCRYHHP PDKSAPKASV ILSPVGLPLR PGAPLCTHYT  360
QRGVCKFGSA CKFDHPMGSL SYSPSASSLA DMPVAPYPVG SSVGTLAPSS SSSELRPELG  420
AGSSKETVSS RMSSMSTSTG SVGLTLSSVG PISHSSTHPS APSSTQSSSS SASTSVTASN  480
TIPHTSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_04250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-123AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020226956.10.0zinc finger CCCH domain-containing protein 34 isoform X1
SwissprotQ84W911e-154C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A151STD40.0A0A151STD4_CAJCA; Zinc finger CCCH domain-containing protein 32
STRINGGLYMA17G02720.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-144C3H family protein