PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_04121 | ||||||||
Common Name | KK1_004221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 202aa MW: 23661.5 Da PI: 4.7079 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.6 | 6.4e-33 | 8 | 126 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGf F+Ptdeelv ++L k++ +++ ++i+e++ +++Pw+L+ k+ + +++yfFsk + +nr+t++gyWk+ g ++++ls+ C.cajan_04121 8 LPPGFFFSPTDEELVLHFLFCKASLIPCHP-NIIPELHSSHLDPWELNGKALFSGNQYYFFSKVN--------ENRTTENGYWKEIGMTEPILSTV 94 79*************************999.89**************96666788999***9875........5899******************9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kk Lvf+ g+ap+ ++t+Wvm+ey++ C.cajan_04121 95 DKKVGMKKYLVFHIGEAPQDTETNWVMQEYHI 126 ******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-42 | 5 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.897 | 8 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-21 | 9 | 126 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEDGSINLPP GFFFSPTDEE LVLHFLFCKA SLIPCHPNII PELHSSHLDP WELNGKALFS 60 GNQYYFFSKV NENRTTENGY WKEIGMTEPI LSTVDKKVGM KKYLVFHIGE APQDTETNWV 120 MQEYHICSSG FDMASYRSAR RRRKHDQSWS KWVLCRVYEK RRCEEGVKCY SDDEDENGSE 180 LSWLDEFYLR LDDDLEEIGM SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 7e-35 | 6 | 165 | 18 | 173 | NAC domain-containing protein 19 |
3swm_B | 7e-35 | 6 | 165 | 18 | 173 | NAC domain-containing protein 19 |
3swm_C | 7e-35 | 6 | 165 | 18 | 173 | NAC domain-containing protein 19 |
3swm_D | 7e-35 | 6 | 165 | 18 | 173 | NAC domain-containing protein 19 |
3swp_A | 7e-35 | 6 | 165 | 18 | 173 | NAC domain-containing protein 19 |
3swp_B | 7e-35 | 6 | 165 | 18 | 173 | NAC domain-containing protein 19 |
3swp_C | 7e-35 | 6 | 165 | 18 | 173 | NAC domain-containing protein 19 |
3swp_D | 7e-35 | 6 | 165 | 18 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_04121 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031209 | 0.0 | KT031209.1 Glycine max clone HN_CCL_4 NAC transcription factor (Glyma04g38990.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020224898.1 | 1e-152 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 4e-59 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A151ST19 | 1e-150 | A0A151ST19_CAJCA; NAC domain-containing protein 68 | ||||
STRING | GLYMA04G38990.1 | 1e-118 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 2e-61 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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