PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_03998
Common NameKK1_004093
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ARF
Protein Properties Length: 987aa    MW: 109682 Da    PI: 6.5125
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_03998genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62e-22126227199
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   +++++
  C.cajan_03998 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDAVLFI--RDEKQ 218
                    99*****************************9545444.38************************************************..56899 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    +l+++++r+
  C.cajan_03998 219 HLLLGIRRA 227
                    99****997 PP
2Auxin_resp121.85.2e-40252334183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    aahaa+++s+F+++YnPras+seFvv+++k++ka+ ++vs+GmRf+m+fete+s  rr++Gt++g+sdldpvrW+nS+Wr+++
  C.cajan_03998 252 AAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMFTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNIQ 334
                    79******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-42118241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-18125226No hitNo description
SMARTSM010191.0E-21126228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956126228IPR003340B3 DNA binding domain
PfamPF023622.4E-20126227IPR003340B3 DNA binding domain
PfamPF065075.0E-35252334IPR010525Auxin response factor
PfamPF023091.4E-8850945IPR033389AUX/IAA domain
PROSITE profilePS5174524.301859952IPR000270PB1 domain
SuperFamilySSF542779.32E-8872937No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 987 aa     Download sequence    Send to blast
MKAPSNGYLP NSGEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPSYPNL PSQLICMLHN VALHADPETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQSR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVAKD LHDNTWAFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDAV LFIRDEKQHL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKAMFTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDL DPVRWKNSQW RNIQVGWDES TAGERPGRVS IWEIEPVVTP  360
FYICPPPFFR PKFPRQPGMQ DDESDVENAF KRAMPWLGDD FGMKDASSSI FPGLSLVQWM  420
SMQPNNQLSA AQSGCFQSML PSNTLQGNLT TDDPSKLLSF QAPVLSAPNL QLNKPNLPSQ  480
IKQLQHSPVQ HATIMNNGVV ASNQFVQQPM AYGQLQQQQL LSGGIPPQQG IQSGSKNTFP  540
LTSLPQDTQF QQQIDQQASL LQRQQQQQQT QLQQSPLQLL QQNLPQRAPQ QPPATQMLQQ  600
NPSEQQLHLQ LLQKLQQQQQ QQKQQQQQIL STSTPLLQSQ LLQQNQQLLQ PLPPISQHQP  660
QQLSNNAFST EKLLNSNNFS SSGLMQSQQL PMNQPQIMQK SLTITRAPST LTDGDAPSCS  720
TSPSTNNCQV SPPNLLKRNQ QLPAALGGSL MVEPTGDVQS HPRNSLPFDS NLDGLTPDTM  780
LLRGYDSQKD LQNLLSNYGG APRDIETELS TADLSSQSFG VPNMPFKPGC SSDVGINDTA  840
VLNNNNNNGL RTNQTPRMRT YTKVQKRGSV GRCIDVTRYK GYDELRHDLA RMFGIEGQLE  900
DPQRTDWKLV YVDHENDILL VGDDPWDEFV ICVQSIKILS SAEVQQMSLD GDLGGNVPIP  960
NQACSGTDSG NAWRGQYEDT SAASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1721535545388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_03998
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027329332.10.0auxin response factor 19-like isoform X2
SwissprotQ8RYC80.0ARFS_ARATH; Auxin response factor 19
TrEMBLA0A151SSJ90.0A0A151SSJ9_CAJCA; Auxin response factor
STRINGXP_010529802.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Perilli S, et al.
    RETINOBLASTOMA-RELATED protein stimulates cell differentiation in the Arabidopsis root meristem by interacting with cytokinin signaling.
    Plant Cell, 2013. 25(11): p. 4469-78
    [PMID:24285791]
  3. Sun Y, et al.
    Manipulation of Auxin Response Factor 19 affects seed size in the woody perennial Jatropha curcas.
    Sci Rep, 2017. 7: p. 40844
    [PMID:28102350]
  4. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  5. Olmo R, et al.
    Molecular Transducers from Roots Are Triggered in Arabidopsis Leaves by Root-Knot Nematodes for Successful Feeding Site Formation: A Conserved Post-Embryogenic De novo Organogenesis Program?
    Front Plant Sci, 2017. 8: p. 875
    [PMID:28603536]
  6. Lee K,Seo PJ
    High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis.
    Planta, 2017. 246(4): p. 797-802
    [PMID:28766014]
  7. Ayala-Rodríguez JÁ,Barrera-Ortiz S,Ruiz-Herrera LF,López-Bucio J
    Folic acid orchestrates root development linking cell elongation with auxin response and acts independently of the TARGET OF RAPAMYCIN signaling in Arabidopsis thaliana.
    Plant Sci., 2017. 264: p. 168-178
    [PMID:28969797]
  8. Nakamura M, et al.
    Auxin and ROP GTPase Signaling of Polar Nuclear Migration in Root Epidermal Hair Cells.
    Plant Physiol., 2018. 176(1): p. 378-391
    [PMID:29084900]
  9. Hong L, et al.
    Alternative polyadenylation is involved in auxin-based plant growth and development.
    Plant J., 2018. 93(2): p. 246-258
    [PMID:29155478]
  10. Lee K,Park OS,Seo PJ
    Arabidopsis ATXR2 deposits H3K36me3 at the promoters of LBD genes to facilitate cellular dedifferentiation.
    Sci Signal, 2018.
    [PMID:29184030]
  11. Kimura T, et al.
    Asymmetric Auxin Distribution is Not Required to Establish Root Phototropism in Arabidopsis.
    Plant Cell Physiol., 2018. 59(4): p. 823-835
    [PMID:29401292]
  12. Schoenaers S, et al.
    The Auxin-Regulated CrRLK1L Kinase ERULUS Controls Cell Wall Composition during Root Hair Tip Growth.
    Curr. Biol., 2018. 28(5): p. 722-732.e6
    [PMID:29478854]
  13. Huang KL, et al.
    The ARF7 and ARF19 Transcription Factors Positively Regulate PHOSPHATE STARVATION RESPONSE1 in Arabidopsis Roots.
    Plant Physiol., 2018. 178(1): p. 413-427
    [PMID:30026290]