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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_03143 | ||||||||
Common Name | KK1_003215 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 372aa MW: 40932.4 Da PI: 5.2464 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 30.6 | 4.2e-10 | 12 | 54 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ie+ r++ + kRr+ +lKK e L +LC+++ + ii ++ + C.cajan_03143 12 IEDFVTRKTCYNKRRASLLKKMEDLTTLCAVDSCAIIDGPGDD 54 899999******************************9988665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.563 | 2 | 48 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-7 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.26E-17 | 3 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.31E-15 | 4 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.5E-10 | 12 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MPRRKKAAQN LIEDFVTRKT CYNKRRASLL KKMEDLTTLC AVDSCAIIDG PGDDVPTVWP 60 SHDKARELLD KFENAPLTDR WRKNVTPQIY VEQKNKKIEN QLAMLKEKND GKDMSIFMHK 120 IHHDGKSLSD FDASDISRLL CYVEGKLKGV REKTGHTKHH ELSPNPPTPP VSCPLKNDIG 180 SQPNTDEPVF EQSTLDLKKE DATMNNGVDN NIGSNNNMGL PPPPHTHLGD VDMVLHQDQV 240 NFEGFNHGDV DMVLPPGNFG GLIDESGSSG VLPQGNFTGL NGNSDSGFLY GSYFGEIGGS 300 DLWPSYGNFG GTIGQHDENQ GGSINNIGLW GHQSNFGANN DAVAVGRSSN YPNFVEGSDI 360 EWPTFEGFFS SK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_03143 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020225349.1 | 0.0 | agamous-like MADS-box protein AGL36 | ||||
TrEMBL | A0A151SQ59 | 0.0 | A0A151SQ59_CAJCA; MADS-box transcription factor PHERES 2 | ||||
STRING | XP_007162987.1 | 1e-127 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15602 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65300.1 | 1e-22 | AGAMOUS-like 38 |