PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_03018
Common NameKK1_003088
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 364aa    MW: 40459.6 Da    PI: 8.348
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_03018genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.6e-4173150178
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    +C v+gC++dls+++eyhrrh+vCe+hsk+pvvlv g++qrfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  C.cajan_03018  73 CCSVDGCSSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQP 150
                    6**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.8E-3367135IPR004333Transcription factor, SBP-box
PROSITE profilePS511413271148IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-3872153IPR004333Transcription factor, SBP-box
PfamPF031101.0E-3074147IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDWHGKELAW DPRGLELANG EGQKNEAASV DLRLGEEKPL PDGAKDAKDS KTVSSPSGSS  60
KRARLQNGSQ NMCCSVDGCS SDLSDCREYH RRHRVCEKHS KTPVVLVGGK QQRFCQQCSR  120
FHSLGEFDEV KRSCRKRLDG HNRRRRKPQP PSLFMSAEKF MYNYKGPRIL HFGSPETYAN  180
PLMRNMWPAT AKTGAESGYD PPRLLYRIDK HKQDKGHPLW QENDPKVGIG YEAMPGTPIS  240
QPVHGTIAPS MGGKSGRKLS SDAKPGSFDS GCALYLLSTL QSQSPELSMV QSGITCPMQS  300
PTRTVHFDAV NEYACQETSK DKNSGQVLVL DANTTNLHYN GMLQMGLDGL VENEDSLTLP  360
FLWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-27741471184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130147KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_03018
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937510.0BT093751.1 Soybean clone JCVI-FLGm-17B4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020228025.10.0squamosa promoter-binding-like protein 16
RefseqXP_020228026.10.0squamosa promoter-binding-like protein 16
RefseqXP_020228027.10.0squamosa promoter-binding-like protein 16
TrEMBLA0A151SPS70.0A0A151SPS7_CAJCA; Squamosa promoter-binding-like protein 16
STRINGGLYMA19G26390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-42SBP family protein