PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_02933 | ||||||||
Common Name | KK1_003002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ERF | ||||||||
Protein Properties | Length: 182aa MW: 20431.5 Da PI: 9.6559 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.9 | 2.9e-14 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grW AeI+ ++ r +lg+f+ ae+Aa a++ a++ l+g C.cajan_02933 26 RFLGVRQRP-SGRWIAEIKG----SsQKLRLWLGTFDKAEDAAMAYDYAARLLRG 75 578******.7******766....2346***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.22E-19 | 25 | 84 | No hit | No description |
PROSITE profile | PS51032 | 19.375 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-30 | 26 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-26 | 26 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-19 | 27 | 83 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.0E-7 | 27 | 38 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-9 | 29 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-7 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MPIEIDKSYE KRVVKVPTVG NKREKRFLGV RQRPSGRWIA EIKGSSQKLR LWLGTFDKAE 60 DAAMAYDYAA RLLRGRNAKT NFPNPGTMNT HEEDCNILGK NPRAYQLLKH VVMKNHALST 120 VMPWKNQIMM RDKFDTLVEE TIVCSIPEQG SDGCCGISLG SSKVYSSVVV APSFSASHEE 180 TP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-13 | 25 | 83 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-13 | 25 | 83 | 4 | 63 | ATERF1 |
3gcc_A | 3e-13 | 25 | 83 | 4 | 63 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_02933 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096863 | 0.0 | BT096863.1 Soybean clone JCVI-FLGm-15D24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020225681.1 | 1e-136 | ethylene-responsive transcription factor ERF069 | ||||
TrEMBL | A0A151SPQ0 | 1e-135 | A0A151SPQ0_CAJCA; Ethylene-responsive transcription factor RAP2-11 | ||||
STRING | XP_007155177.1 | 1e-103 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12349 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-18 | related to AP2 11 |