PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_02496 | ||||||||
Common Name | KK1_002559 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 338aa MW: 38218.4 Da PI: 5.0983 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWTteEde+l ++++ G g+W++ ++ g+ R++k+c++rw +yl C.cajan_02496 14 KGRWTTEEDEILSKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.2e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+ +v+++ +G++ W++Ia++++ gRt++++k++w+++l C.cajan_02496 67 RGNITAEEENTIVKLHSSFGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.081 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.19E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.41E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.711 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGRWTTE EDEILSKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADLKRGNI TAEEENTIVK LHSSFGNRWS LIASHLPGRT DNEIKNYWNS HLSRKIYSFP 120 KQAGAVVMDT AKAATLIPPK RKGGRTSRWA MKRNKSYTQN DTPQRPTQSF TQHNNDTAAV 180 PPLEADVAEV GERRREVVEG VEESSDDDIL GLRKMEGINE GSGALGFSDV LETCGVRNLS 240 EERDVMGVTC HNKMASSESS VNGDSGGEWY SCSSTTLASE ESWDWESVIE FNKISESEAY 300 DWEHQEKLLT WLWEDDDWET DCKTNSQMQN DMVAWFLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-23 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-22 | 12 | 116 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-22 | 12 | 116 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 5e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 4e-23 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-23 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_02496 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093463 | 1e-155 | BT093463.1 Soybean clone JCVI-FLGm-17G16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020226892.1 | 0.0 | transcription factor MYB12 | ||||
TrEMBL | A0A151SNJ7 | 0.0 | A0A151SNJ7_CAJCA; Transcription factor MYB12 | ||||
STRING | GLYMA02G01740.1 | 1e-138 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 2e-78 | myb domain protein 12 |