PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_02320
Common NameKK1_002382
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 281aa    MW: 31732.3 Da    PI: 6.3577
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_02320genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-182875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  l+++v+ +G g+W++ ar  g++Rt+k+c++rw++yl
    C.cajan_02320 28 KGPWTEEEDSVLINYVNVHGEGHWNSLARSAGLKRTGKSCRLRWLNYL 75
                     79********************************************97 PP
2Myb_DNA-binding47.44.4e-1581124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l++d++ ++G++ W++Ia+ ++ gRt++++k++w++
    C.cajan_02320  81 RGNITLQEQLLILDLHSRWGNR-WAKIAEQLP-GRTDNEIKNYWRT 124
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.0662379IPR017930Myb domain
SuperFamilySSF466891.09E-3025122IPR009057Homeodomain-like
SMARTSM007172.5E-152777IPR001005SANT/Myb domain
PfamPF002492.1E-162875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-222982IPR009057Homeodomain-like
CDDcd001672.67E-113075No hitNo description
PROSITE profilePS5129417.82880130IPR017930Myb domain
SMARTSM007175.8E-1380128IPR001005SANT/Myb domain
PfamPF002491.1E-1381124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-2183128IPR009057Homeodomain-like
CDDcd001672.79E-985124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
METMSVQFMR CLSDSDSYGS EEEMAIKKGP WTEEEDSVLI NYVNVHGEGH WNSLARSAGL  60
KRTGKSCRLR WLNYLRPNVR RGNITLQEQL LILDLHSRWG NRWAKIAEQL PGRTDNEIKN  120
YWRTRVVKQA KQLKCDVNSK QFRDAVRFVW MPRLMERIQA ASSSSSSSSY AHDKTNLCNT  180
KAQNESSGAK PITFCDNSVV VSSYSSGVGL SDTSTTSSCN LMGDGSLSMD CAEKGSMSST  240
LWQQWDYSDL QASEPANGFG DADLWTDENI SFLQQYLAHD F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-242612225120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_02320
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5892991e-127KC589299.1 Macrotyloma uniflorum cultivar VZM-1 transcription factor MYB76 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020227457.10.0transcription factor MYB78
SwissprotQ10MB43e-79MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A151SMY90.0A0A151SMY9_CAJCA; Myb-related protein 305 family
STRINGXP_007145122.11e-151(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.14e-78myb domain protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]