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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_01887 | ||||||||
Common Name | KK1_001936 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | YABBY | ||||||||
Protein Properties | Length: 135aa MW: 15466.5 Da PI: 10.2933 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 136.5 | 3.1e-42 | 35 | 108 | 96 | 170 |
YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + + + +v++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl C.cajan_01887 35 NNRIAM-RPPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 108 333333.3334556666789*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.2E-40 | 27 | 108 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.96E-8 | 51 | 101 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.1E-5 | 56 | 102 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MAAAFQSLST WQDVQGPGLL NPEYKIDTGS TSKYNNRIAM RPPTTHVTEE RVVNRPPEKR 60 QRVPSAYNQF IKEEIQRIKA NNPDISHREA FSTAAKNWAH FPHIHFGLML DNNNQAKMEN 120 VSEKHLMSRA ALLNK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_01887 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095084 | 1e-159 | BT095084.1 Soybean clone JCVI-FLGm-6P7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020225582.1 | 2e-98 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 1e-51 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A151SLU3 | 6e-97 | A0A151SLU3_CAJCA; Axial regulator YABBY 5 | ||||
STRING | GLYMA17G12200.1 | 5e-88 | (Glycine max) | ||||
STRING | XP_007155017.1 | 4e-88 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 4e-54 | YABBY family protein |
Publications ? help Back to Top | |||
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