PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_00661 | ||||||||
Common Name | KK1_000680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | HSF | ||||||||
Protein Properties | Length: 273aa MW: 31675.9 Da PI: 7.4466 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.7 | 2.8e-36 | 26 | 117 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl+k+y++++d+++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv ++ weF++++F+kg k+ll++i C.cajan_00661 26 FLTKTYQLVDDPHTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFRKGAKHLLCEI 112 9****************************************************************999.........******************* PP XXXXX CS HSF_DNA-bind 98 krkks 102 +r+k+ C.cajan_00661 113 HRRKT 117 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.1E-38 | 17 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.6E-58 | 22 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.99E-34 | 23 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.7E-32 | 26 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-19 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-19 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 65 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-19 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MAFTLDRFEE NMVFTLESQK SVPAPFLTKT YQLVDDPHTD HIVSWGEDET TFVVWRPPEF 60 ARDLLPNYFK HNNFSSFVRQ LNTYGFKKVV ADRWEFANEY FRKGAKHLLC EIHRRKTPQQ 120 HHQLFHHDQQ SPSQILQQDE SLCWLDTPLP SPKPSTDILT ALSEDNQRLR RKNFMLLSEL 180 SHMKSLYNDI IYFIQNHIKP APFEQRSSSA AIAKLVELDS LHGSPIDMGV LRSSKSCIVD 240 KSLISSYEES NSSVKLFGVP LSGRKRLHPD NTN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-21 | 21 | 117 | 16 | 122 | Heat shock factor protein 1 |
5d5u_B | 2e-21 | 21 | 117 | 25 | 131 | Heat shock factor protein 1 |
5d5v_B | 2e-21 | 21 | 117 | 25 | 131 | Heat shock factor protein 1 |
5d5v_D | 2e-21 | 21 | 117 | 25 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_00661 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096982 | 0.0 | BT096982.1 Soybean clone JCVI-FLGm-21M20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020228892.1 | 0.0 | heat stress transcription factor B-4b | ||||
Swissprot | Q9C635 | 2e-89 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A151SI68 | 0.0 | A0A151SI68_CAJCA; Heat stress transcription factor B-4 | ||||
STRING | GLYMA20G08250.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1612 | 33 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 2e-88 | heat shock transcription factor B4 |